| Keywords |
Database Description |
Website |
| Serine |
Serine
Protease home page |
http://biochem.wustl.edu/~protease/
|
|
Serine
protease |
http://expasy.org/cgi-bin/get-entries?KW=Serine%20protease
|
| S-Ramp |
S-RAMP
(STEP-Results, Applications, and Modeling Phase) |
http://center.stelab.nagoya-u.ac.jp/web1/sramp/eng/srm1.html
|
| Sanger |
miRBase::Sequences (The miRBase Targets database is a new resource of
predicted miRNA targets in animals) |
http://microrna.sanger.ac.uk/sequences/
|
|
Merops- The
peptidase database |
http://merops.sanger.ac.uk/
|
|
Tree families
database, The Sanger Institute (Phylogenetic tree) |
http://www.treefam.org/
|
|
The Vertebrate
Genome Annotation (VEGA) database |
http://vega.sanger.ac.uk/
|
| SARS |
SARS BASICS
Database Information |
http://www.sars999.info/basics/modules/wiwimod/
|
| Satellite
Dna |
PlantSat (A
Database Of Plant Satellite Dna) |
http://w3lamc.umbr.cas.cz/PlantSat/
|
| SBML
(Systems Biology Markup Language) |
Fungal
databases - Fungus-Host Distributions |
http://nt.ars-grin.gov/fungaldatabases/fungushost/FungusHost.cfm
|
|
SBML and the
BioModel Database |
http://www.biomodels.net/
|
| Swiss
Institute of Bioinformatics |
The ExPASy
(Expert Protein Analysis System) proteomics server of the Swiss
Institute of Bioinformatics (SIB) is dedicated to the analysis of
protein sequences and structures as well as 2-D PAGE (Disclaimer /
References). |
http://expasy.org/
|
| Search
engine |
Bioinformatics
open access institute |
http://bioinformatics.org/
|
| Second Law
of themodynamics |
Second Law of
thermodynamics (information resource) |
http://www.secondlaw.com/
|
|
Entropy and
Second Law |
http://www.2ndlaw.com/
|
| Signature
Database |
MSigDB:
Molecular Signature Database |
http://www.broad.mit.edu/gsea/msigdb/msigdb_index.html
|
| Sequence |
EMBL
Nucleotide Sequence Database |
http://www.ebi.ac.uk/embl/
|
|
NCBI (National
centre for Biotechnological Information) |
http://www.ncbi.nlm.nih.gov/Entrez/
|
|
HIV sequence
databases |
http://www.hiv.lanl.gov/
|
|
Influenza
Sequence Database |
http://www.flu.lanl.gov/
|
|
Swiss-Prot
Protein sequence knowledgebase |
http://expasy.org/sprot/
|
|
Protein
information resource |
http://pir.georgetown.edu/
|
|
The On-Line
Encyclopedia of Integer Sequences (Maths database) |
http://www.research.att.com/~njas/sequences/
|
|
STD Sequence
Databases |
http://www.stdgen.lanl.gov/
|
|
Hepatitis C
Virus Sequence Databases |
http://hcv.lanl.gov/
|
|
International
Nucleotide Sequence Database Collaboration |
http://www.insdc.org/
|
|
VectorDB
contains annotations and sequence information for many vectors commonly
used in molecular biology. |
http://seq.yeastgenome.org/vectordb/
|
|
miRBase:
sequences the home of microRNA data |
http://microrna.sanger.ac.uk/sequences/
|
|
List of
Sequence Database |
http://en.wikipedia.org/wiki/Sequence_database
|
|
Picornavirus
Sequence Database |
http://www.iah.bbsrc.ac.uk/virus/Picornaviridae/SequenceDatabase/
|
|
TREP, the
Triticeae Repeat Sequence Database |
http://wheat.pw.usda.gov/ITMI/Repeats/
|
|
KSD (Kinase
Sequence Database) |
http://sequoia.ucsf.edu/ksd/
|
|
The National
Center for Genome Resources (NCGR) |
http://www.ncgr.org/
|
|
Streptococcus
pyogenes emm sequence database |
http://www.cdc.gov/ncidod/biotech/strep/strepindex.htm
|
|
Aptamer
Database (Aptamers have been selected which bind nucleic acid, proteins,
small organic compounds, and even entire organisms) |
http://aptamer.icmb.utexas.edu/
|
|
Virus
Bioinformatics Sequences |
http://www.biochem.ucl.ac.uk/bsm/virus_database/
|
|
Potyvirus
Sequence Database Search Page |
http://www.uidaho.edu/pses/potyvirus/
|
|
Monsanto
Microbial Sequence Database |
http://microbial.cereon.com/
|
|
DDBJ (DNA
Databank of Japan) |
http://www.ddbj.nig.ac.jp/
|
|
The HSP70
Sequence Database |
http://bioinfo.med.utoronto.ca/HSP70/
|
|
BAC End
Sequence Database Search |
http://www.tigr.org/tdb/at/atgenome/bac_end_search/bac_end_search.html
|
|
MitoProteome
is an object-relational mitochondrial protein sequence database
generated from experimental evidence and public databases, and
containing both mitochondrial- and nuclear-encoded entries. |
http://www.mitoproteome.org/
|
|
The EcoGene
Database of Escherichia coli Sequence and Function |
http://ecogene.org/
|
|
TREP, the
Triticeae Repeat Sequence Database |
http://grain.jouy.inra.fr/ggpages/ITMI/Repeats/index.shtml
|
|
cpnDB: A
Chaperonin Database |
http://cpndb.cbr.nrc.ca/
|
|
The Personal
Sequence Database |
http://bioinfo.cgrb.oregonstate.edu/psd/
|
|
Ehrlichia
ruminantium Genome sequence database |
http://www.bi.up.ac.za/Ehrlichia_ruminantium/
|
|
Protein
Phosphorylation Database Search Menu |
http://vigen.biochem.vt.edu/xpd/xpdindex.htm
|
|
Sequence
Database (list of Sequence Databases) |
http://www.physics.iisc.ernet.in/~dichome/seqdb.htm
|
|
TargetDB (A
database of peptides targeting proteins to cellular locations) |
http://molbio.nmsu.edu:81/
|
|
TIGR's Genome
Projects are a collection of curated databases containing DNA and
protein sequence, gene expression, cellular role, protein family, and
taxonomic data for microbes, plants and humans. |
http://www.tigr.org/tdb/
|
|
Prostate
Expression Database. |
http://www.pedb.org/
|
|
An integrated
computer environment for sequence annotation and analysis |
http://wwwabi.snv.jussieu.fr/imagene
|
|
The GDB Human
Genome Database |
http://gdbwww.gdb.org/
|
|
Expressed
Sequence Tags database |
http://www.ncbi.nlm.nih.gov/dbEST/index.html
|
|
REBASER (The
Restriction Enzyme Database) |
http://rebase.neb.com/rebase/rebase.html
|
|
Prosite |
http://www.expasy.ch/prosite
|
|
Swiss-Prot
Protein knowledgebase TrEMBL Computer-annotated supplement to Swiss-Prot
UniProt logo |
http://www.expasy.ch/sprot/
|
ACS (Active Sequence Collection) -Biologically-active short amino acid sequences
|
http://bioinformatica.isa.cnr.it/ASC/ |
| ASTRAL- Sequences of domains of known structure, selected subsets, and sequence-structure correspondences |
http://astral.berkeley.edu/ |
| SRS |
Sequence
Retrieval System |
http://www.expasy.ch/srs5/
|
| STS |
dbSTS:
database of "Sequence Tagged Sites" (STS) |
http://www.ncbi.nlm.nih.gov/dbSTS/
|
| Sheep |
Sheep Genome Project |
http://www.projects.roslin.ac.uk/sheepmap/front.html
|
|
Sheep Genome Resources |
http://www.ncbi.nlm.nih.gov/genome/guide/sheep/
|
| Signal
Transduction or Signaling Pathway |
Signal
Transduction database list |
http://www.biochemweb.org/signaling.shtml
|
|
Signaling
Pathway Database |
http://www.grt.kyushu-u.ac.jp/spad/
|
| aMAZE-A system for the annotation, management, and analysis of biochemical and signalling pathway networks |
http://www.scmbb.ulb.ac.be/amaze/ |
|
The Microbial
Signal Transduction database |
http://genomics.ornl.gov/mist/
|
|
Signal
transduction and related databases |
http://www.wisdom.weizmann.ac.il/~biospi/STDB_links.htm
|
|
Murine Notch
Signal Transduction Database |
http://web.biosci.utexas.edu/artzt_lab/notch/
|
|
BioCarta (Charting Pathway of
Life)
(Metabolic & Signalling Pathway Database) |
http://www.biocarta.com/genes/
|
| Similarity |
KEGG SSDB
(Sequence Similarity DataBase) |
http://www.genome.jp/kegg/ssdb/
|
| Small |
Small RNA
database. |
http://mbcr.bcm.tmc.edu/smallRNA/smallrna.html
|
| SNP |
SNP (Single
Nucleotide Polymorphism) |
http://www.ncbi.nlm.nih.gov/SNP/
|
|
A database of
Japanese Single Nucleotide Polymorphisms |
http://snp.ims.u-tokyo.ac.jp/
|
|
G-SNP - A
Database of Japanese Single Nucleotide Polymorphism for Geriatric
Research |
http://www.tmgh.metro.tokyo.jp/jg-snp/english/E_top.html
|
|
C. elegans Single Nucleotide Polymorphism Data |
http://genome.wustl.edu/genome/celegans/celegans_snp.cgi
|
|
SNP and
Genotyping Overview |
http://las.perkinelmer.com/content/snps/genotyping.asp
|
|
CASCAD
database -=- Cuppen Group (a database of annotated candidate single
nucleotide polymorphisms associated with expressed sequences) |
http://cascad.niob.knaw.nl/
|
|
KISNP : The
Karolinska Institute Single Nucleotide Polymorphism Research Center |
http://kisnp.cgb.ki.se/
|
|
Human SNP
Database |
http://www.bioinfo.org.cn/relative/Human%20SNP%20Database%20Homepage.htm
|
|
Barley SNP
Database |
http://bioinf.scri.ac.uk/barley_snpdb/
|
|
The Mouse SNP
Database |
http://mousesnp.roche.com/
|
|
Human
Chromosome 21 cSNP Database and MAP |
http://csnp.unige.ch/
|
|
SiPeP (SNPs in
Peptides/Proteins) is a database of Nonsynonymous coding SNPs (Single
Nucleotide Polymorphisms) obtained from the public database dbSNP |
http://cutty-ext.cryst.bbk.ac.uk/sipep/
|
|
Maritime pine
SNP database |
http://www.pierroton.inra.fr/genetics/Pinesnps/index.html
|
| ColiSNP: Mapping non-synonymous SNPs on protein structures |
http://yayoi.kansai.jaea.go.jp/colisnp |
| dbqSNP: Quantification of SNP allele frequencies |
http://qsnp.gen.kyushu-u.ac.jp/ |
| Soybean |
Soybean Database |
http://www.agbionetwork.org/~soybeangenome/index.php
|
|
Soybean Genome Database |
http://soybeangenome.siu.edu/
|
| Solanaceae |
Solanaceae Genome Database
(Potato) |
http://www.solgd.org/
|
| Sorghum |
SorghumDb Data Collection Site |
http://algodon.tamu.edu/sorghumdb.html
|
|
Sorghum Transcription factor
database |
http://planttfdb.cbi.pku.edu.cn/web/index.php?sp=sb
|
| Species |
CITES species
database |
http://www.cites.org/eng/resources/species.html
|
|
Dendrochronology species database |
http://www01.wsl.ch/species/
|
|
Species
Database |
http://www.badbear.com/signa/
|
|
Generate a
Species List from the NISbase Distributed Database System. |
http://www.nisbase.org/nisbase/index.jsp
|
|
Plant Species
Life Form |
http://www.fs.fed.us/database/feis/plants/index.html
|
| Spindle |
Spindle RNAi:
MitoSpindleScreen |
http://rnai.ucsf.edu/mitoscreendb/
|
| Spirotrichous ciliates |
Ciliate IES-MDS database: Macro- and micronuclear genes in spirotrichous ciliates |
http://oxytricha.princeton.edu/dimorphism/database.htm |
| Sporadic |
Parallel
analysis of sporadic primary ovarian carcinomas by spectral karyotyping,
comparative genomic hybridization, and expression microarrays. |
http://www.progenetix.de/~pgscripts/progenetix/P12067990/ideogram.html
|
| Stem Cell |
The Stem Cell
Database |
http://stemcell.princeton.edu/
|
|
MPSS Stem Cell
Database |
http://202.6.241.9/supplmat/mpss/stemcellMPSS.htm
|
|
Stem Cell
Therapeutics Outcomes Database (SCTOD) |
http://www.cibmtr.org/DATA/SCTOD/index.html
|
| sRna |
HuSiDa: Human
siRNA Database |
