DBD
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Alternative splicingBlastCandida spDEFGHIJKLMNOPQRSTUVWXYZ
 
Proceed by clicking the first alphabet of the keyword
 
Keywords Database Description Website
Serine Serine Protease home page http://biochem.wustl.edu/~protease/
Serine protease http://expasy.org/cgi-bin/get-entries?KW=Serine%20protease
S-Ramp S-RAMP (STEP-Results, Applications, and Modeling Phase) http://center.stelab.nagoya-u.ac.jp/web1/sramp/eng/srm1.html
Sanger miRBase::Sequences (The miRBase Targets database is a new resource of predicted miRNA targets in animals) http://microrna.sanger.ac.uk/sequences/
Merops- The peptidase database http://merops.sanger.ac.uk/
Tree families database, The Sanger Institute (Phylogenetic tree) http://www.treefam.org/
The Vertebrate Genome Annotation (VEGA) database http://vega.sanger.ac.uk/
SARS SARS BASICS Database Information http://www.sars999.info/basics/modules/wiwimod/
Satellite Dna PlantSat (A Database Of Plant Satellite Dna) http://w3lamc.umbr.cas.cz/PlantSat/
SBML (Systems Biology Markup Language) Fungal databases - Fungus-Host Distributions http://nt.ars-grin.gov/fungaldatabases/fungushost/FungusHost.cfm
SBML and the BioModel Database http://www.biomodels.net/
Swiss Institute of Bioinformatics The ExPASy (Expert Protein Analysis System) proteomics server of the Swiss Institute of Bioinformatics (SIB) is dedicated to the analysis of protein sequences and structures as well as 2-D PAGE (Disclaimer / References). http://expasy.org/
Search engine Bioinformatics open access institute http://bioinformatics.org/
Second Law of themodynamics Second Law of thermodynamics (information resource) http://www.secondlaw.com/
Entropy and Second Law http://www.2ndlaw.com/
Signature Database MSigDB: Molecular Signature Database http://www.broad.mit.edu/gsea/msigdb/msigdb_index.html
Sequence EMBL Nucleotide Sequence Database http://www.ebi.ac.uk/embl/
NCBI (National centre for Biotechnological Information) http://www.ncbi.nlm.nih.gov/Entrez/
HIV sequence databases http://www.hiv.lanl.gov/
Influenza Sequence Database http://www.flu.lanl.gov/
Swiss-Prot Protein sequence knowledgebase http://expasy.org/sprot/
Protein information resource http://pir.georgetown.edu/
The On-Line Encyclopedia of Integer Sequences (Maths database) http://www.research.att.com/~njas/sequences/
STD Sequence Databases http://www.stdgen.lanl.gov/
Hepatitis C Virus  Sequence Databases http://hcv.lanl.gov/
International Nucleotide Sequence Database Collaboration http://www.insdc.org/
VectorDB contains annotations and sequence information for many vectors commonly used in molecular biology. http://seq.yeastgenome.org/vectordb/
miRBase: sequences the home of microRNA data http://microrna.sanger.ac.uk/sequences/
List of Sequence Database http://en.wikipedia.org/wiki/Sequence_database
Picornavirus Sequence Database http://www.iah.bbsrc.ac.uk/virus/Picornaviridae/SequenceDatabase/
TREP, the Triticeae Repeat Sequence Database http://wheat.pw.usda.gov/ITMI/Repeats/
KSD (Kinase Sequence Database) http://sequoia.ucsf.edu/ksd/
The National Center for Genome Resources (NCGR) http://www.ncgr.org/
Streptococcus pyogenes emm  sequence database http://www.cdc.gov/ncidod/biotech/strep/strepindex.htm
Aptamer Database (Aptamers have been selected which bind nucleic acid, proteins, small organic compounds, and even entire organisms) http://aptamer.icmb.utexas.edu/
Virus Bioinformatics Sequences http://www.biochem.ucl.ac.uk/bsm/virus_database/
Potyvirus Sequence Database Search Page http://www.uidaho.edu/pses/potyvirus/
Monsanto Microbial Sequence Database http://microbial.cereon.com/
DDBJ (DNA Databank of Japan) http://www.ddbj.nig.ac.jp/
The HSP70 Sequence Database http://bioinfo.med.utoronto.ca/HSP70/
BAC End Sequence Database Search http://www.tigr.org/tdb/at/atgenome/bac_end_search/bac_end_search.html
MitoProteome is an object-relational mitochondrial protein sequence database generated from experimental evidence and public databases, and containing both mitochondrial- and nuclear-encoded entries. http://www.mitoproteome.org/
The EcoGene Database of Escherichia coli Sequence and Function http://ecogene.org/
TREP, the Triticeae Repeat Sequence Database http://grain.jouy.inra.fr/ggpages/ITMI/Repeats/index.shtml
cpnDB: A Chaperonin Database http://cpndb.cbr.nrc.ca/
The Personal Sequence Database http://bioinfo.cgrb.oregonstate.edu/psd/
Ehrlichia ruminantium Genome sequence database http://www.bi.up.ac.za/Ehrlichia_ruminantium/
Protein Phosphorylation Database Search Menu http://vigen.biochem.vt.edu/xpd/xpdindex.htm
Sequence Database (list of Sequence Databases) http://www.physics.iisc.ernet.in/~dichome/seqdb.htm
TargetDB (A database of peptides targeting proteins to cellular locations) http://molbio.nmsu.edu:81/
TIGR's Genome Projects are a collection of curated databases containing DNA and protein sequence, gene expression, cellular role, protein family, and taxonomic data for microbes, plants and humans. http://www.tigr.org/tdb/
Prostate Expression Database. http://www.pedb.org/
An integrated computer environment for sequence annotation and analysis http://wwwabi.snv.jussieu.fr/imagene
The GDB Human Genome Database http://gdbwww.gdb.org/
Expressed Sequence Tags database http://www.ncbi.nlm.nih.gov/dbEST/index.html
REBASER (The Restriction Enzyme Database) http://rebase.neb.com/rebase/rebase.html
Prosite http://www.expasy.ch/prosite
Swiss-Prot Protein knowledgebase TrEMBL Computer-annotated supplement to Swiss-Prot UniProt logo http://www.expasy.ch/sprot/
ACS (Active Sequence Collection) -Biologically-active short amino acid sequences
http://bioinformatica.isa.cnr.it/ASC/
ASTRAL- Sequences of domains of known structure, selected subsets, and sequence-structure correspondences http://astral.berkeley.edu/
SRS Sequence Retrieval System http://www.expasy.ch/srs5/
STS dbSTS: database of "Sequence Tagged Sites" (STS) http://www.ncbi.nlm.nih.gov/dbSTS/
Sheep Sheep Genome Project http://www.projects.roslin.ac.uk/sheepmap/front.html
Sheep Genome Resources http://www.ncbi.nlm.nih.gov/genome/guide/sheep/
Signal Transduction or Signaling Pathway Signal Transduction database list http://www.biochemweb.org/signaling.shtml
Signaling Pathway Database http://www.grt.kyushu-u.ac.jp/spad/
aMAZE-A system for the annotation, management, and analysis of biochemical and signalling pathway networks http://www.scmbb.ulb.ac.be/amaze/
The Microbial Signal Transduction database http://genomics.ornl.gov/mist/
Signal transduction and related databases http://www.wisdom.weizmann.ac.il/~biospi/STDB_links.htm
Murine Notch Signal Transduction Database http://web.biosci.utexas.edu/artzt_lab/notch/
BioCarta (Charting Pathway of Life) (Metabolic & Signalling Pathway Database) http://www.biocarta.com/genes/
DRASTIC: Database resource for analysis of signal transduction in plant cells http://www.drastic.org.uk/
Similarity KEGG SSDB (Sequence Similarity DataBase) http://www.genome.jp/kegg/ssdb/
Small Small RNA database. http://mbcr.bcm.tmc.edu/smallRNA/smallrna.html
SNP SNP (Single Nucleotide Polymorphism) http://www.ncbi.nlm.nih.gov/SNP/
A database of Japanese Single Nucleotide Polymorphisms http://snp.ims.u-tokyo.ac.jp/
F-SNP: Functional effects of various human SNPs

http://compbio.cs.queensu.ca/F-SNP/
G-SNP - A Database of Japanese Single Nucleotide Polymorphism for Geriatric Research http://www.tmgh.metro.tokyo.jp/jg-snp/english/E_top.html
C. elegans Single Nucleotide Polymorphism Data http://genome.wustl.edu/genome/celegans/celegans_snp.cgi
SNP and Genotyping Overview http://las.perkinelmer.com/content/snps/genotyping.asp
CASCAD database -=- Cuppen Group (a database of annotated candidate single nucleotide polymorphisms associated with expressed sequences) http://cascad.niob.knaw.nl/
KISNP : The Karolinska Institute Single Nucleotide Polymorphism Research Center http://kisnp.cgb.ki.se/
Human SNP Database http://www.bioinfo.org.cn/relative/Human%20SNP%20Database%20Homepage.htm
Barley SNP Database http://bioinf.scri.ac.uk/barley_snpdb/
The Mouse SNP Database http://mousesnp.roche.com/
Human Chromosome 21 cSNP Database and MAP http://csnp.unige.ch/
SiPeP (SNPs in Peptides/Proteins) is a database of Nonsynonymous coding SNPs (Single Nucleotide Polymorphisms) obtained from the public database dbSNP  http://cutty-ext.cryst.bbk.ac.uk/sipep/
Maritime pine SNP database http://www.pierroton.inra.fr/genetics/Pinesnps/index.html
ColiSNP: Mapping non-synonymous SNPs on protein structures http://yayoi.kansai.jaea.go.jp/colisnp
dbqSNP: Quantification of SNP allele frequencies http://qsnp.gen.kyushu-u.ac.jp/
Soybean Soybean Database http://www.agbionetwork.org/~soybeangenome/index.php
Soybean Genome Database http://soybeangenome.siu.edu/
Solanaceae  Solanaceae Genome Database (Potato) http://www.solgd.org/
Sorghum SorghumDb Data Collection Site http://algodon.tamu.edu/sorghumdb.html
Sorghum Transcription factor database http://planttfdb.cbi.pku.edu.cn/web/index.php?sp=sb
Species CITES species database http://www.cites.org/eng/resources/species.html
Dendrochronology species database http://www01.wsl.ch/species/
Species Database http://www.badbear.com/signa/
Generate a Species List from the NISbase Distributed Database System. http://www.nisbase.org/nisbase/index.jsp
Plant Species Life Form http://www.fs.fed.us/database/feis/plants/index.html
Spindle Spindle RNAi: MitoSpindleScreen http://rnai.ucsf.edu/mitoscreendb/
Spirotrichous ciliates Ciliate IES-MDS database: Macro- and micronuclear genes in spirotrichous ciliates http://oxytricha.princeton.edu/dimorphism/database.htm
Sporadic Parallel analysis of sporadic primary ovarian carcinomas by spectral karyotyping, comparative genomic hybridization, and expression microarrays. http://www.progenetix.de/~pgscripts/progenetix/P12067990/ideogram.html
Stem Cell The Stem Cell Database http://stemcell.princeton.edu/
MPSS Stem Cell Database http://202.6.241.9/supplmat/mpss/stemcellMPSS.htm
Stem Cell Therapeutics Outcomes Database (SCTOD) http://www.cibmtr.org/DATA/SCTOD/index.html
sRna HuSiDa: Human siRNA Database http://itb.biologie.hu-berlin.de/~nebulus/sirna/v2/
Stromal Cell StroCDB: The Stromal Cell Database http://stromalcell.princeton.edu/
Steroid Collecting Duct Database(cddb) Steroid Metabolizing Enzymes http://cddb.nhlbi.nih.gov/cddb/display.php?Section=23
Steriod Regulated Gene Expression Database http://amadeus.biosci.arizona.edu/~vikram/sachin1/Search.php
Structure Structure Prediction & Modeling (List of database) http://restools.sdsc.edu/biotools/biotools9.html
DASSD: Dihedral Angle and Secondary Structure Database ofShort Amino Acid Fragments http://www.cs.rmit.edu.au/dassd/
Welcome to Secondary Structure Matching a tool for protein structure comparison http://www.ebi.ac.uk/msd-srv/ssm/
The HSSP database is a database of homology-derived secondary structure of proteins http://swift.cmbi.kun.nl/gv/hssp/
RNA Secondary Structure Prediction http://cnx.org/content/m11065/latest/
HSSP: Homology derived Secondary Structure of Proteins http://www.sander.ebi.ac.uk/hssp/
Domain-domain interactions in proteins with known 3D structures http://gatealoy.pcb.ub.es/3did/
AutoPSI - Automated structural classification of protein sequences
http://www.bio.ifi.lmu.de/AutoPSIDB
CATH: Classification of protein domain structures http://www.cathdb.info/
ChemBank: Structures and biological activities of small organic molecules http://chembank.broad.harvard.edu/
ChemDB: 3D structures and properties of small molecules http://cdb.ics.uci.edu/
CSD (Cambridge Structural Database): Crystal structure information for organic and metal organic compounds. http://www.ccdc.cam.ac.uk/prods/csd/csd.html
Dali database: Fold classification based on protein structure-structure alignment http://ekhidna.biocenter.helsinki.fi/dali/start
DMAPS: Multiple Alignments for Protein Structures http://bioinformatics.albany.edu/~dmaps
Sus scrofa Sus scrofa genome http://pre.ensembl.org/Sus_scrofa/index.html
Swiss Bioinformatics Institute Swiss Bioinformatics Institute (Home Page) http://www.isb-sib.ch/
SPdb 4.0 (A Signal Peptide Database) http://proline.bic.nus.edu.sg/spdb/
Synapse The Synapse database is an online resource promoting the nexus of art and science. http://www.synapse.net.au/
SynDB: Synapse DataBase (A comprehensive collection of molecules related with synapse) http://syndb.cbi.pku.edu.cn/
Molecular Physiology of Synaptic Interactions:Analysis of Defined Mammalian Mutants Mouse Synapse Database http://www.biochem.uni-erlangen.de/MouseDB/
Synteny Synteny databases list http://bip.weizmann.ac.il:6130/hg3m/databases/synteny.html
Synteny Resources http://ecrbase.dcode.org/synteny.php

 

 

Database Submission Form:Submit Databases to DBD in the following format. After verification it will be posted in DBD in 2 or 3 weeks. For further queries contact rrskiran@msrit.edu.

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DBD: Database of Biological Database team are R.R. Siva Kiran, MVN Setty, Department of Biotechnology, MS Ramaiah Institute of Technology, MSR Nagar, Bangalore, India and G. Hanumantha Rao, Center for Biotechnology, Department of Chemical Engineering, Andhra University, Visakhapatnam-530003, India. DBD consists of 1200 Database entries covering wide range of databases useful for biological researchers.

Encouragements List (or list of database contributors)

Andhra University
All Rights Reserved, Maintained by R.R. Siva Kiran, Department of Biotechnology, MS Ramaiah Institute of Technology, Bangalore, India
Last update: 30-July-2008