| Keywords | Database Description | Website |
| E.Coli | E.Coli Database | http://www.uni-giessen.de/~gx1052/IECA/ieca.html |
| online database for comparative genomics of E. coli and its relatives | http://colibase.bham.ac.uk/ | |
| List of E.Coli Database | http://ecoli.bham.ac.uk/index/dat.html | |
| Escherichia coli K-12 (strain MG1655) genome | http://genprotec.mbl.edu/ | |
| Encyclopedia of Escherichia coli K-12 Genes and Metabolism | http://ecocyc.org/ | |
| Essential genes in E. coli :First results of an E. coli gene deletion project | http://www.genome.wisc.edu/resources/essential.htm | |
| EHCO:Encyclopedia of Hepatocellular Carcinoma genes Online | http://ehco.iis.sinica.edu.tw/ | |
| EchoBASE :Post-genomic studies of Escherichia coli | http://www.ecoli-york.org/ | |
| ASAP - A Systematic Annotation Package Community analysis of E. coli and related genomes | https://asap.ahabs.wisc.edu/annotation/php/ASAP1.htm | |
| EcoCyc:E. coli K-12 genome, metabolic pathways, transporters, and gene regulation |
http://ecocyc.org/ | |
| Protein interaction database for E. coli | http://www.bacteriome.org/ | |
| CCDB - The CyberCell Database: E. coli database at U. Alberta | http://redpoll.pharmacy.ualberta.ca/CCDB | |
| Colibri: E. coli genome database at Institut Pasteur | http://genolist.pasteur.fr/Colibri/ | |
| DPInteract: Binding sites for E. coli DNA-binding proteins | http://arep.med.harvard.edu/dpinteract/ | |
| EBI | European Bioinformatics Institute | http://www.ebi.ac.uk/Databases/ |
| E-MSD - EBI-Macromolecular Structure Database :EBI's collection of protein structures |
http://www.ebi.ac.uk/msd | |
| EBI Genomes:EBI's collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes |
http://www.ebi.ac.uk/genomes | |
| Ecology | Fire Ecology Database | http://www.talltimbers.org/info/fedbintro.htm |
| Evolutionary Ecology Database | http://www.plantae.info/ | |
| Ecosystem | Ecosystem Database | http://ecomdb.niaes.affrc.go.jp/e_top_about.php |
| Terrestrial Ecosystem Database | http://www-cger.nies.go.jp/cger-e/db/enterprise/ecosystem/ecosystem_index_e.html | |
| Electron Density Map | Macro Molecular Structural Database | http://www.ebi.ac.uk/msd/Temblor/Temblor7.html |
| Electrophoresis | Two-Dimensional Electrophoresis Database of HSG cells proteins | http://hitech-d.iwate-med.ac.jp/biochem/biochem/kamo/index.html |
| Electrostatic potentials | eF-site - Electrostatic surface of Functional site: Electrostatic potentials and hydrophobic properties of the active sites |
http://ef-site.protein.osaka-u.ac.jp/eF-site |
| Epilepsy | CarpeDB: A database on the genetics of epilepsy | http://www.carpedb.ua.edu/ |
| Embryonic Stem Cell | Human Embryonic Stem Cell Lines | http://www.stemcellcommunity.org/metadot/index.pl?id=2181 |
| Endocrine networks | EndoNet :Information about the components of endocrine networks |
http://endonet.bioinf.med.uni-goettingen.de/ |
| Endogenous Retrovirus | Human Endogenous Retrovirus Database | http://herv.img.cas.cz/ |
| EROP(Endogenous Regulatory OligoPeptides) | EROP-Moscow :A database of Endogenous Regulatory OligoPeptides | http://erop.inbi.ras.ru/ |
| Endoplasmic reticulum | Database of endoplasmic reticulum resident proteins | http://www.mcb.mcgill.ca/~hera/ |
| ER-GolgiDB (a database of predicted ER and Golgi localization based on sequence homology) | http://cubic.bioc.columbia.edu/db/ERGolgiDB/ | |
| Endosymbiont | Drosophila Endosymbiont Database | http://flyendo.arl.arizona.edu/ |
| Enzyme | Enzyme nomenclature database | http://www.expasy.ch/enzyme/ |
| ENZYME :Enzyme nomenclature and sequences |
http://www.expasy.org/enzyme/ | |
| BRENDA: The Comprehensive Enzyme Information System | http://www.brenda.uni-koeln.de/ | |
| EzCatDB:Enzyme catalytic mechanism database | http://mbs.cbrc.jp/EzCatDB/ | |
| Enzyme Nomenclature:IUBMB Nomenclature Committee recommendations and updates |
http://www.chem.qmul.ac.uk/iubmb/enzyme/ | |
| Enzyme Structures Database | http://www.biochem.ucl.ac.uk/bsm/enzymes/ | |
| The Restriction Enzyme Database | http://rebase.neb.com/rebase/rebase.html | |
| IntEnz (Integrated relational Enzyme database) | http://www.ebi.ac.uk/intenz/ | |
| The Enzyme Database | http://www.enzyme-database.org/ | |
| KEGG LIGAND Database | http://www.genome.ad.jp/ligand/ | |
| A Database of Enzyme Catalytic Mechanisms | http://mbs.cbrc.jp/EzCatDB/ | |
| Thermodynamics of Enzyme-Catalyzed Reactions | http://xpdb.nist.gov/enzyme_thermodynamics/ | |
| Carbohydrate-Active enzymes | http://www.cazy.org/ | |
| END: Enzyme Nomenclature Database | http://www.biocheminfo.org/end/ | |
| CSA (Catalytic Site Atlas): Enzyme active sites and catalytic residues in enzymes of known 3D structure | http://www.ebi.ac.uk/thornton-srv/databases/CSA/ | |
| DSD: Database of dehydrogenase enzyme stereospecificities | http://www.jenner.ac.uk/DSD | |
| Epigenetic | Chromatin Database | http://www.chromdb.org/beginners.html |
| Epitopes |
Epitome:Database of structure-inferred antigenic epitopes |
http://rostlab.org/services/epitome/ |
| Endoplasmic reticulum | Endoplasmic reticulum membrane database | http://opm.phar.umich.edu/localization.php?localization=Endoplasmic%20reticulum%20membrane |
| Erythropoiesis | EpoDB - Erythropoiesis Database:Genes expressed during human erythropoiesis | http://www.cbil.upenn.edu/EpoDB/ |
| ERGO database |
ERGO-Light :Integrated biochemical data on 10 bacterial genomes: Publicly-available portion of the ERGO database | http://www.ergo-light.com/ |
ERIC(Enteropathogen Resource Integration Center ) |
Enteropathogen Resource Integration Center | http://www.ericbrc.org/ |
| Eukaryotic | Eukaryotic Promoter Database | http://www.epd.isb-sib.ch/ |
| ExInt:Exon-intron structure of eukaryotic genes |
http://sege.ntu.edu.sg/wester/exint/ | |
| eSLDB - eukaryotic Subcellular Localization database:Subcellular localization of entire eukaryotic proteomes |
http://gpcr.biocomp.unibo.it/esldb | |
| euGenes:Common summaries of gene and genomic information for eukaryotic organisms | http://eugenes.org/ | |
| EPD:Eukaryotic POL II promoters with experimentally-determined transcription start sites |
http://www.epd.isb-sib.ch/ | |
| EPGD :Eukaryotic Paralog Group Database |
http://epgd.biosino.org:8080/EPGD/ | |
| Ensembl :Annotated information on eukaryotic genomes |
http://www.ensembl.org/ | |
| Estrogen Responsive Genes Database | diArk: Database of eukaryotic sequencing projects | http://www.diark.org/ |
| Esterases | ERGDB - Estrogen Responsive Genes Database |
http://research.i2r.a-star.edu.sg/promoter/Ergdb-v11/ |
| ESTHER:Esterases and related alpha/beta hydrolase superfamily enzymes |
http://bioweb.ensam.inra.fr/ESTHER/general?what=index | |
| EST (Expressed Sequence Tags) | The Expressed Sequence Tags database contains sequence data | http://www.ncbi.nlm.nih.gov/dbEST/ |
| Pig Expressed Sequence Tags Database | http://pigest.genome.iastate.edu/ | |
| Coccolithophorids Expressed Sequence Tags (EST) & Microarray Database | http://bioinfo.csusm.edu/ | |
| Chicken EST database | http://www.chickest.udel.edu/ | |
| Phytopathogenic Fungi and Oomycete EST Database | http://cogeme.ex.ac.uk/ | |
| taxonomically broad EST database | http://tbestdb.bcm.umontreal.ca/searches/login.php | |
| Liver EST Database | http://lestdb.nhri.org.tw/ | |
| CR-EST - Crop ESTs: Barley, wheat, pea, and potato ESTs | http://pgrc.ipk-gatersleben.de/cr-est | |
| Diatom EST Database: ESTs from two diatom algae, Thalassiosira pseudonana and Phaeodactylum tricornutum | http://www.biologie.ens.fr/diatomics/EST/ | |
| EASED - Extended Alternatively Spliced EST Database:Alternatively spliced ESTs | http://eased.bioinf.mdc-berlin.de/ | |
| EDAS - EST-Derived Alternative Splicing Database:Alternative splicing deduced from EST data | http://www.ig-msk.ru:8005/EDAS/ | |
| Evolution | Creation/Evolution Reference Database | http://www.baz.com/litm/CERD/ |
| ECRbase:Evolutionary conserved regions, promoters, and transcription factor binding sites |
http://ecrbase.dcode.org/ | |
| eggNOG:Evolutionary genealogy of genes: Non-supervised Orthologous Groups |
http://eggnog.embl.de/ | |
| Evolutionary Tree | Tree families database | http://www.treefam.org/ |
| Exon | Structural Exon Database | http://glinka.bio.neu.edu/SEDB/SEDB.html |
| Expasy | ExPASy (Expert Protein Analysis System) - UniProt Knowledgebase: Swiss-Prot and TrEMBL | http://expasy.org/sprot/ |
| Expression Database | Plant Ontology enhanced expression database | http://www.plexdb.org/plex.php?database=Barley |
| E. coli Gene Expression Database | http://chase.ou.edu/oubcf/ | |
| EICO DB - Expression-based Imprint Candidate Organiser:A database for discovery of novel imprinted genes | http://fantom2.gsc.riken.jp/EICODB/ | |
| EMAGE:Edinburgh Mouse Atlas gene expression database | http://genex.hgu.mrc.ac.uk/Emage/database/ | |
| CleanEx: Expression reference database, linking heterogeneous expression data to facilitate cross-dataset comparisons | http://www.cleanex.isb-sib.ch/ |
