 |
| . |
                          |
| |
| Search according to your keyword |
| P53 |
The IARC TP53
Mutation Database |
http://www-p53.iarc.fr/ |
| p53 WEB SITE &
Datbase |
http://p53.free.fr/ |
| Database of
germline p53 mutations |
http://www.lf2.cuni.cz/projects/germline_mut_p53.htm |
| p53 mutation
database in human mutational database |
http://www.cbi.pku.edu.cn/mirror/GenomeWeb/human-gen-db-mutation.html |
| Pair wise
Alignment |
Alignment
Databases (List of alignment database) |
http://www.genomics.ceh.ac.uk/aligndb/about.php |
| PASS2 : a
semi-automated database of Protein Alignments Organised as Structural
Superfamilies |
http://caps.ncbs.res.in/campass/pass.html |
| Histone
Database : Primary reference: The Histone Database: a comprehensive
resource for histones and histone fold-containing proteins |
http://research.nhgri.nih.gov/histones/web/alignments.shtml |
| HOMSTRAD : a
collection of protein families, clustered on the basis of sequence and
structural similarity. |
http://www-cryst.bioc.cam.ac.uk/homstrad/ |
| EMBL-ALIGN :
The EBI accepts submissions of nucleotide sequence alignment data |
http://www.ebi.ac.uk/webin-align/webin_align_listali.html |
| SUPFAM : This
database consists of colonies of potentially related homologous protein
domains, with and without three-dimensional structural information,
forming superfamilies. |
http://pauling.mbu.iisc.ernet.in/~supfam/ |
| ALIGN : ALIGN
is a compendium of sequence alignments: it is a companion resource to
PRINTS. |
http://umber.sbs.man.ac.uk/dbbrowser/ALIGN/ |
| HSSP :
Structural homology can be inferred from the level of sequence
similarity. |
http://www.cmbi.kun.nl/gv/hssp/ |
| Paragoly |
Paradb is an
object oriented database created to predict and map paralogous regions
in vertebrate genomes. |
http://abi.marseille.inserm.fr/paradb/ |
| Parasite |
Host-parasite
database |
http://www.nhm.ac.uk/research-curation/projects/host-parasites/ |
| Parasite
information database |
http://www.doxdesk.com/parasite/database.html |
| Parasites Databases |
http://www.tigr.org/tdb/parasites/ |
| Global Mammal
Parasite Database |
http://www.mammalparasites.org/ |
| WU-Blast2 -
Parasite Genomes Database Query |
http://www.ebi.ac.uk/blast2/parasites.html |
| Parasitology Database |
http://hwml.unl.edu/PARASITE/ |
| The Parasite
Database |
http://www.parasitesrus.com/ |
| Pscroph, a
parasitic plant EST database enriched for parasite associated
transcripts |
http://www.citebase.org/abstract?id=oai%3Abiomedcentral.com%3A1471-2229-5-24 |
| Browser
Parasites |
http://allentech.net/parasite/index.phtml |
| Comparasite: A database for comparative study of parasite cDNAs |
|
| Pathway |
Metabolic Database
|
http://cgsc.biology.yale.edu/metab.html
|
|
Metabolic database (Metabolome)
|
http://metabolic-database.com/
|
|
KEGG (PATHWAY Database)
|
http://www.genome.jp/kegg/pathway.html
|
|
BioSilico is a web-based
database system that facilitates the search and analysis of metabolic
pathways
|
http://biosilico.kaist.ac.kr/
|
|
BioCarta (Charting Pathway of
Life)
|
http://www.biocarta.com/genes/
|
|
RAMEDIS, the Rare Metabolic
Diseases Database
|
http://www.ramedis.de/
|
|
PathCase: Metabolic Pathways
Database System
|
http://nashua.case.edu/pathwaysweb/
|
|
MetaCyc is a database of
nonredundant, experimentally elucidated metabolic pathways.
|
http://metacyc.org/
|
|
MPW: the Metabolic Pathways
Database
|
http://citeseer.ist.psu.edu/selkov98mpw.html
|
|
Small Metabolic Pathway
Database
|
http://cgsc.biology.yale.edu/metab.html
|
BioCyc - Pathway/genome databases for many bacteria
|
http://biocyc.org/ |
| BRITE
- Biomolecular Relations in Information Transmission and Expression
Molecular interactions and pathways database, part of the KEGG system |
http://www.genome.ad.jp/brite |
| Pattern |
Database for cross species expression pattern comparisons |
http://ani.embl.de/4DXpress |
| PCR |
PCR Database |
http://pcr.sdstate.org/ |
| LAM-PCR
Database |
https://consert.gatc-biotech.com/lampcr/ |
| RTPrimerDB,
Real Time PCR Primer and Probe Database |
http://medgen.ugent.be/rtprimerdb/ |
| PCR library |
http://www.gednet.org/?page_id=20 |
| The
Distribution of the Human DNA-PCR Polymorphisms |
http://www.uni-duesseldorf.de/WWW/MedFak/Serology/dna.html |
| DNA
Methylation analysis PCR Primer Database |
http://medgen.ugent.be/methprimerdb/ |
| dbSTS
(database of "Sequence Tagged Sites) |
http://www.ncbi.nlm.nih.gov/dbSTS/ |
| Qualitative
Quantitative PCR Database (list of PCR Database) |
http://cardiogenomics.med.harvard.edu/groups/proj1/pages/pcr-db_static.html |
| PDB |
Protein Data
Bank(PDB) |
http://molbio.info.nih.gov/doc/mtg/pdb.html |
| Protein
Database |
http://www.rcsb.org/pdb/home/home.do |
| Pedigree |
The Pedigree
Database |
http://www.pedigreedatabase.com/ |
| Open database
for Poodle pedigrees |
http://www.poodlepedigree.com/ |
| Keeshond
Pedigree Database |
http://www.keesdog.com/ |
| The Online
Pedigree Database |
http://pawvillage.com/ |
| Pea aphid |
AphidBase -
Genomic database for the pea aphid (Acyrthosiphon pisum)
|
http://www.aphidbase.com/ |
| Peptide |
Welcome to the
Antimicrobial Peptide Database |
http://aps.unmc.edu/AP/main.php |
| Bioactive
Polypeptide Database |
http://biopd.bjmu.edu.cn/help.asp |
| CoPS -
Comprehensive Peptide Signature Database |
http://203.90.127.70/copsv2/index.asp |
| Peptide
Database (Cancer) |
http://www.cancerimmunity.org/peptidedatabase/Tcellepitopes.htm |
| SPdb : A
Signal Peptide Database |
http://proline.bic.nus.edu.sg/spdb/ |
| Welcome to the
JenPep Database. JenPep is a database of quantitative binding data for
immunological protein-peptide interactions. |
http://www.jenner.ac.uk/JenPep/ |
| Database of
Nonribosomal Peptide Synthetases |
http://linux1.nii.res.in/~zeeshan/webpages/home.html |
| Peptide
Antigen Database |
http://www.proteinlounge.com/peptide_home.asp |
| NRPSDB: A
Database of NONRIBOSOMAL PEPTIDE SYNTHETASES |
http://203.90.127.50/~zeeshan/webpages/nrpsall.html |
| The MHC-Peptide
Interaction Database version T (MPID-T) is a new generation database for
sequence-structure-function information on T cell receptor/peptide/MHC
interactions. It contains all structures of TcR/pMHC and pMHC
complexes, with emphasis on the structural characterization of these
complexes. |
http://surya.bic.nus.edu.sg/mpidt/ |
| Bioactive
Peptide Database - Details |
http://www.molecularstation.com/bioinformatics/link/detail/link-815.html |
| AntiJen
Database:Peptide Library Search (A kinetic, thermodynamic and cellular
Database V2) |
http://www.jenner.ac.uk/AntiJen/aj_peplib.htm |
| PepSeeker: a
database of proteome peptide identifications for investigating
fragmentation patterns. |
http://nwsr.bms.umist.ac.uk/pepseeker |
| A Database Of
Mhc Ligands And Peptide Motifs (Ver. 1.0) |
http://www.syfpeithi.de/ |
| System Biology
Database |
http://www.proteinlounge.com/ |
| GenomeNet icon
(DBGET Search – LITDB) LITDB is a database of key words and key phrases
for compounds, fact data, and subjects from the protein and peptide
literature. |
http://www.genome.ad.jp/htbin/www%5Fbfind?litdb |
| Arabidopsis
Unannotated Secreted Peptide Database |
http://peptidome.missouri.edu/ |
| Comprehensive
Database of Mechanisms of Peptide Fragmentation |
http://www.highchem.com/publications/comprehensive-database-of-mechanisms-of-peptide-fragmentation.html |
| Antimicrobial
Peptide Database |
http://aps.unmc.edu/AP/main.html |
| PeptideMass
cleaves a protein sequence from the UniProt Knowledgebase (Swiss-Prot
and TrEMBL) or a user-entered protein sequence with a chosen enzyme, and
computes the masses of the generated peptides. |
http://www.expasy.ch/tools/peptide-mass.html |
| Peptide
Database |
http://www.peptideatlas.org/ |
| S A P D -
Synthetic Antibiotic Peptide Database |
http://www.molecularstation.com/bioinformatics/link/detail/link-821.html |
| The MHC-Peptide
Interaction Database (MHCP) is a curated MySQL database for
sequence-structure-function information on MHC-Peptide interactions. |
http://sege.ntu.edu.sg/wester/mhcp/intro.htm |
| Peptide
Antigen Database |
http://www.peptides.net/index.aspx?ID=76269 |
| BciPep a
database of B cell epitopes (Bcipep is collection of the peptides
having the role in Humoral immunity.) |
http://www.imtech.res.in/raghava/bcipep/info.html |
| PEPSEEKER
(Peptide Identification Database) |
http://www.nwsr.manchester.ac.uk/cgi-bin/pepseeker/pepseek.pl |
| ProteinProspector |
http://prospector.ucsf.edu/ |
| Peptide
Conformation Database |
http://www.peptidome.org/products/conformation.htm |
| PenBase is a
curated database devoted to Penaeidins |
http://www.penbase.immunaqua.com/ |
| DOMINO: a
database of domain-peptide interactions. |
http://mint.bio.uniroma2.it/domino/search/searchWelcome.do |
| Peptide
Database List |
http://www.peptidestation.com/peptide-links/index.php?list=top |
| Bioinformatics
Centre , IISc / Research (Peptide Database) |
http://www.physics.iisc.ernet.in/~dichome/rh.htm |
| PepBank - a database of peptides
based on sequence text mining and public peptide data sources |
http://pepbank.mgh.harvard.edu/ |
| ANTIMIC -
Database of natural antimicrobial peptides |
http://research.i2r.a-star.edu.sg/Templar/DB/ANTIMIC/ |
| |
ASPD-Artificial Selected Proteins/Peptides Database |
http://wwwmgs.bionet.nsc.ru/mgs/gnw/aspd/ |
| Peptide signature |
CoPS: Comprehensive peptide signature database |
http://cops.igib.res.in/copsv2/index.html |
| Pest |
Australian
Plant Pest Database |
http://www.planthealthaustralia.com.au/appd/index.asp |
| PLANT PEST
DATABASE |
http://infoagro.net/health/caraphin/plantpest.cfm |
| Find a Pest
Database |
http://www.scientificpest.com.au/spmpdbcr.html |
| Pest Control
Database |
http://www.eddingerspestcontrol.com/pests/pests.htm |
| Pest database |
http://mips.gsf.de/proj/cdna/Sites/PP_EST_Database.htm |
| Pharmacogenomics |
Pharmacogenomics resources |
http://www.pharmgkb.org/ |
| Pharmacogenomics database |
http://libraryprn.blogspot.com/2006/10/new-pharmacogenomics-database.html |
| Pharmacology |
Pharmacology
databases |
http://www.ebioinfogen.com/pharma.htm |
| List of
Phramacology Databases |
http://www.infochembio.ethz.ch/links/en/pharm_db.html |
| Clinical
Pharmacology Resources |
http://www.geocities.com/HotSprings/2255/drugs.html |
| Pharmacophore |
3D Database
Searching in Drug Discovery |
http://www.netsci.org/Science/Cheminform/feature06.html |
| Phenotype |
Genotype and
Phenotype Database Management System (GPDB) |
http://apps.sbri.org/gpdb/ |
| IRSA Rett
Phenotype Database |
http://www.ichr.uwa.edu.au/rett/irsa |
| RescueMu Maize Mutant Phenotype Database |
http://www.maizegdb.org/rescuemu-phenotype.php |
| GenomeRNAi is
a database of phenotypes from systematic RNA interference (RNAi) screens
in cultured Drosophila cells. |
http://www.dkfz.de/signaling2/rnai/index.php |
| DECIPHER -
DatabasE of Chromosomal Imbalance and Phenotype in Humans using Ensembl
Resources |
http://www.sanger.ac.uk/PostGenomics/decipher/ |
| MRPath Mouse
Strain Phenotype Database |
http://www.mrpath.com/visiblemouse.html |
| InterRett
Output Database |
http://www.ichr.uwa.edu.au/rett/irsa/pages/output/ |
| dbGaP
(database of Genotype and Phenotype) |
http://www.ncbi.nlm.nih.gov/sites/entrez?db=gap |
| The AGNS
Phenotype DataBase |
http://wwwmgs.bionet.nsc.ru/agns/phenotype.html |
| Phenylalanine |
PAHdb (PAH :
Phenylalanine Hydroxylase Locus Knowledgebase web site) |
http://www.pahdb.mcgill.ca/ |
| ELM is
becoming the primary resource for phosphorylation data. |
http://www.cbs.dtu.dk/databases/PhosphoBase/ |
| Phosphorylation site database |
http://vigen.biochem.vt.edu/xpd/xpd.htm |
| A database of
S/T/Y/ Phosphorylation site |
http://phospho.elm.eu.org/ |
| (PHOSIDA)
Phosphorylation site database |
http://www.phosida.com/ |
| PhosphoBase: a
database of phosphorylation sites. |
http://www.bio-computing.org/showabstract.php?pmid=9399879 |
| Phylip |
Package phylip |
http://pdb.finkproject.org/pdb/package.php/phylip |
| Phylogenetics |
Treebase
(A Database of Phylogenetic
Analysis) |
http://www.treebase.org/ |
| Legume "Phylo-informatics"
dbase |
http://www.public.asu.edu/~mfwojci/legumephylo_dBase.html |
| PALI
(Phylogeny and ALIgnment of homologous protein structures) |
http://pauling.mbu.iisc.ernet.in/~pali/ |
| The Phylogeny
of Sleep Website |
http://www.bumc.bu.edu/Dept/Content.aspx?DepartmentID=481&PageID=12252 |
| Phylogenetical |
cisRED: Phylogenetically conserved regulatory DNA sequence motifs |
http://www.cisred.org/ |
| Pig |
Pig Genome Resources |
http://www.ncbi.nlm.nih.gov/genome/guide/pig/ |
| Pig Genome Information |
http://www.animalgenome.org/pigs/ |
| Pig Expressed Sequence Tags
Database |
http://pigest.genome.iastate.edu/ |
| Sus scrofa genome |
http://pre.ensembl.org/Sus_scrofa/index.html |
| Plaque |
Amyloid plaque
forming protein main page |
http://www.cmbi.kun.nl/swift/FUNPEP/gergo/ |
| Plant |
PlantGDB (Plant Genome Database) |
http://www.plantgdb.org/ |
| MIPSPlantsDB - MIPS Plants
Databases. The MIPS plant genomics group focuses on the bioinformatics
of plant genomes. |
http://mips.gsf.de/projects/plants |
| List of Plant Genome Databases and
Resources |
http://www.cbi.pku.edu.cn/mirror/GenomeWeb/plant-gen-db.html |
| GO annotations for agriculturally important plants and animals |
http://www.agbase.msstate.edu/ |
| BarleyBase-Expression profiling of plant genomes |
http://www.barleybase.org/ |
| Plasmid |
Plasmid Genome
Database |
http://www.genomics.ceh.ac.uk/plasmiddb/ |
| Plasmid
Information Database |
http://dnaseq.med.harvard.edu/plasmid_database.htm |
| PlasmID
(Plasmid information Database) |
http://plasmid.med.harvard.edu/PLASMID/ |
| Plasmid Home
Page |
http://www.plasmids.bham.ac.uk/default.htm |
| Database of
Plasmid Replicons |
http://www.essex.ac.uk/bs/staff/osborn/DPR_home.htm |
| Plasmid
Database |
http://gind-db.ucsf.edu:8000/cgi-bin/Plasmid/main_menu2.cgi |
| The NCDIR
Plasmid Database |
http://routlab-mac.rockefeller.edu/cgi-bin/plasmid/clone.pl |
| Plasmid
Database |
http://www.hirschilab.org/plasmid/ |
| Plasmid::db is
a project management tool for molecular biology |
http://plasmidb.sourceforge.net/ |
| Pleiotropic |
HTLV-I Tax
(Tax Pleiotropic Effects Database) |
http://www.virologycentralmultimedia.com/tax/tax-pleiotropic-effects-database.php |
| Polyanion |
DB-PABP: Database of experimentally characterized polyanion-binding proteins |
http://ppa.bcf.ku.edu/DB_PABP/ |
| Polymerase |
Human DNA
polymerase Gamma Mutation Database |
http://dir-apps.niehs.nih.gov/polg/ |
| MITOMAP (A
human mitochondrial genome database) |
http://www.mitomap.org/ |
| Polyadenylation |
Poly Adb
Polyadenylation Database |
http://polya.umdnj.edu/ |
| Polymer
Database PoLyInfo systematically provides various data required for
polymeric material design. The main data source is academic literature
on polymers. |
http://polymer.nims.go.jp/polyinfo_top_eng.htm |
| Potato |
Solanaceae Genome Database |
http://www.solgd.org/ |
| PCR
(Polymerase Chain Reaction) |
PCR: The Web
page for information and links on PCR |
http://www.horizonpress.com/gateway/pcr.html |
| Polymorphism |
The Singapore
Human Mutation And Polymorphism Database |
http://shmpd.bii.a-star.edu.sg/ |
| A new
polymorphism database |
http://hum-molgen.org/NewsGen/08-1998/000003.html |
| IPD - The
Immuno Polymorphism Database |
http://www.ebi.ac.uk/ipd/ |
| BioPD ---
Bioactive Polypeptide Database is a resource of bioactive peptides. |
http://biopd.bjmu.edu.cn/ |
| Soy Bean
Genome Database |
http://soybeangenome.siu.edu/ |
| Merops –
Peptidase Database |
http://merops.sanger.ac.uk/cgi-bin/make_substrates?id=A02.007 |
| Pre-tRNA-processing
protein PTA1 |
http://beta.uniprot.org/uniprot/Q01329 |
| dbRIP is a
database of human Retrotransposon Insertion Polymorphisms (RIPs), |
http://falcon.roswellpark.org:9090/ |
| Post-translational |
dbPTM: Post-translational modifications of proteins |
http://dbptm.mbc.nctu.edu.tw/ |
| Primer |
RTPrimerDB
(Real Time PCR Primer and Probe Database) |
http://medgen.ugent.be/rtprimerdb/ |
| Primer
Sequences database |
http://plantbio.berkeley.edu/~bruns/primers.html |
| A Primer on
Databases and Catalogs |
http://www.usg.edu/galileo/skills/unit04/ |
| Real Time PCR
Primer Sets |
http://www.realtimeprimers.org/ |
| Primers
database |
http://ntddb.abcc.ncifcrf.gov/cgi-bin/Primers.pl |
| Access the
Nematode Primer Database |
http://ucdnema.ucdavis.edu:591/KNOWL/PRIMERDB/default.htm |
| IMGT/PRIMER-DB Query page |
http://imgt3d.igh.cnrs.fr/PrimerDB/Query_PrDB.pl |
| Embedded
Database Primer |
http://www.dbazine.com/ofinterest/oi-articles/koopmann5 |
| A Database
Primer |
http://www.databaseprimer.com/index.html |
| Human prion
gene coding region |
http://www.mad-cow.org/prion_point_mutations.html |
| Pristionchus pacificus |
A database on the nematode Pristionchus pacificus |
http://appadb.eb.tuebingen.mpg.de/ |
| Probe |
Molecular
Probe Data Base |
http://www.biotech.ist.unige.it/interlab/mpdb.html |
| RTPrimerDB:
the real-time PCR primer and probe database |
http://medgen.ugent.be/rtprimerdb/ |
| Probe-Database |
http://clsql.b9.com/manual/probe-database.html |
| MX Probe Data
Base |
http://mxdb.com/ |
| Real Time PCR
Primer and Probe Database |
http://biowww.net/detail-417.html |
| Pre-Designed
Oligonucleotide Database |
http://www.ctaalliance.org/MCBI/OligoDatabase.html |
| CISMM Magnetic
Probe Database |
http://www.cs.unc.edu/Research/nano/cismm/dissemination/magprobe.html |
| Viral Probe
Database |
http://genestamp.ibms.sinica.edu.tw/virus/viralProbe.htm |
| The Zebrafish
Database Class: RNA PROBE |
http://zfin.org/zf_info/dbase/PAPERS/ZFIN_DataModel/sectionii_16.html |
| A Database To
Aid Probe Design For Virus Identification |
http://bioinfo.csie.ncu.edu.tw./ |
| PROBE: A
Prospective Database of Infants with Cholestasis |
http://www.barcnetwork.org/families/probe.html |
| Barley Genetic
Probe Database |
http://barleygenomics.wsu.edu/db1/db1-searchframes.html |
| Molecular
Probe Data Base (MPDB) |
http://citeseer.ist.psu.edu/149336.html |
| Pseudogene |
Pseudogene
information |
http://www.pseudogene.org/ |
| Hoppsigen
(Homologous Processed Pseudogenes database rel 4.0) |
http://pbil.univ-lyon1.fr/databases/hoppsigen.html |
| UI Pseudogenes |
http://genome.uiowa.edu/pseudogenes/ |
| Profile |
Profile
Database: Home |
http://www.profiledatabase.com/ |
| PRODORIC is a
comprehensive database about molecular networks in prokaryotes with
focus on transcriptional regulation.It includes the biggest available
list of transcription factor binding sites in prokaryotes. |
http://prodoric.tu-bs.de/ |
| PPD - Proteome
Profile Database |
http://www.bioinfo.de/isb/2004/04/0019/ |
| Prokaryote |
Prokaryote
Database |
http://www.pseudogene.org/cgi-bin/db-gen.cgi?type=Prokaryote |
| A recent
addition has been community analysis with terminal restriction fragment
length polymorphisms (T-RFLP). |
http://rdp8.cme.msu.edu/html/TAP-trflp.html |
| The
Prokaryotic Growth Temperature Database (PGTdb) |
http://pgtdb.csie.ncu.edu.tw/ |
| Prokaryote
Genome Size Database |
http://www.genomesize.com/prokaryotes/ |
| Contiguous
Proline repeats |
http://www.ncl-india.org/trips/mono/PRO10.HTM |
| Comparative Genometrics: DNA walks, nucleotide skews and other biometric measures of prokaryotic genomes |
http://www.unil.ch/comparativegenometrics/ |
| Promotor |
Transcriptional Regulatory Element Database |
http://rulai.cshl.edu/cgi-bin/TRED |
| The Eukaryotic
Promoter Database is an annotated non-redundant database |
http://www.epd.isb-sib.ch/ |
| PRESTA
promoter database, EST |
http://baloun.entu.cas.cz/presta/ |
| Eukaryotic
Promoter Database |
http://www.genome.jp/dbget-bin/www_bfind?epd |
| Osteo-Promoter
Database (OPD) is a catalogic database of functional genesin osteogenic
proliferation and differentiation. OPD analyzes promoters ofgenes which
differentiates along with the osteogenic pathway. |
http://www.opd.tau.ac.il/ |
| SCPD (The
Promoter Database of Saccharomyces cerevisiae) |
http://rulai.cshl.edu/SCPD/ |
| Drosophila
Core Promoter Database (DCPD) |
http://www-biology.ucsd.edu/labs/Kadonaga/DCPD.htm |
| GPD (Genomatix
Promoter Database) |
http://www.genomatix.de/gpd.html |
| TiProD:
Tissue-Specific Promoter Database |
http://tiprod.cbi.pku.edu.cn:8080/index.html |
| Promoters
(List of Promoter Database) |
http://bip.weizmann.ac.il/toolbox/seq_analysis/promoters.html |
| Promoter
Region Primer Database for Arabisopsis Genome |
http://vhp.ntu.edu.sg/arab/index.html |
| EPD (The
Eukaryotic Promoter Database) |
http://www.epd.isb-sib.ch/ |
| Transcription
factor binding sites |
http://www.oreganno.org/oregano/OtherResources.jsp |
| Promoter
databases (wikipedia database list) |
http://www.biodirectory.com/biowiki/Promoter_databases |
| Prosite |
Database of
protein domains, families and functional sites. |
http://www.expasy.ch/prosite/ |
| Prosthetic |
The Prosthetic
groups and Metal Ions in Protein Active Sites Database Version 2.0 |
http://metallo.scripps.edu/promise/ |
| Protease |
The MEROPS
database (Peptide Database) |
http://merops.sanger.ac.uk/ |
| HIV Protease
Database |
http://mcl1.ncifcrf.gov/hivdb/index.html |
| HIV Structural
Database & Chem-BLAST |
http://srdata.nist.gov/hivdb/ |
| Proteases of
E. coli |
http://www.cf.ac.uk/biosi/staff/ehrmann/tools/proteases.index.html |
| HIV Drug
Resistance Database |
http://hivdb.stanford.edu/ |
| Protease
Research information |
http://www.proteases.org/ |
| HIV drugs
database |
http://www.coreynahman.com/antiHIVdrugdatabase61499.html |
| Plant PI
DataBase |
http://www.ba.itb.cnr.it/PLANT-PIs/ |
| HIV Protease
Structural Database |
http://portal.acm.org/citation.cfm?id=792771.793832 |
| Proteases of
E. coli database |
http://www.cf.ac.uk/biosi/staff/ehrmann/tools/proteases/allproteases.html |
| Database of
potential inhibitors of SARS protease |
http://lib.bioinfo.pl/blid:356 |
| CUTDB: Community annotation resource for proteases, their substrates and cleavage sites |
http://cutdb.burnham.org/ |
| Proteasome |
PlantsUBQ - A
Functional Genomics Database for the Ubiquitin/26S Proteasome
Proteolytic Pathway in Plants |
http://plantsubq.genomics.purdue.edu/ |
| Protein |
The RCSB PDB
provides a variety of tools and resources for studying the structures of
biological macromolecules and their relationships to sequence, function,
and disease. |
http://www.rcsb.org/ |
| Human Protein
Reference Database |
http://www.hprd.org/ |
| BioThesaurus: A collection of gene/protein names and associated sequences |
http://pir.georgetown.edu/iprolink/biothesaurus |
| ExPASy
Proteomics Server |
http://expasy.org/ |
| Nuclear
Protein Database (NPD) |
http://npd.hgu.mrc.ac.uk/ |
| he Human
Mitochondrial Protein Database (HMPDb) provides comprehensive data on
mitochondrial and human nuclear encoded proteins involved in
mitochondrial |
http://bioinfo.nist.gov/hmpd/index.html |
| A Database of Human Unidentified Gene-Encoded (HUGE) Large
Proteins Analyzed |
http://www.kazusa.or.jp/huge/ |
| UniProt
(Protein Information Resource) |
http://pir.georgetown.edu/ |
| Pfam is a
large collection of multiple sequence alignments and hidden Markov
models covering many common protein domains and families. |
http://www.sanger.ac.uk/Software/Pfam/ |
| PDD - NIMH-NCI
Protein-Disease Database |
http://www-lmmb.ncifcrf.gov/PDD/ |
| Benchmark-Protein classification benchmark collection: training/test sets for machine learning |
http://net.icgeb.org/benchmark/ |
| Yeast Protein
Complex Database |
http://yeast.cellzome.com/ |
| Secreted
Protein Database |
http://spd.cbi.pku.edu.cn/ |
BindingDB-Binding affinities of protein-ligand and other complexes
|
http://www.bindingdb.org/ |
| Binding MOAD- Binding Mother of All Databases: a database of protein-ligand crystal structures |
http://www.bindingmoad.org/ |
| The TC system
is analogous to the Enzyme Commission (EC) system for classification of
enzymes, but incorporates phylogenetic information additionally. |
http://www.tcdb.org/ |
| Arabidopsis
Nucleolar Protein Database - Home |
http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/home |
| Protein
Structure Database |
http://www.psc.edu/~deerfiel/PSdb/ |
| ProDom is a
comprehensive set of protein domain families automatically generated
from the SWISS-PROT and TrEMBL sequence databases |
http://prodom.prabi.fr/ |
| The C. elegans
Protein Database: Wormpep |
http://www.sanger.ac.uk/Projects/C_elegans/WORMBASE/current/wormpep.shtml |
| GenomeNet icon
(DBGET Search - Protein-today) |
http://www.genome.ad.jp/dbget-bin/www_bfind?protein-today |
| UniProtKB/Swiss-Prot
(Protein Database) |
http://www.ebi.ac.uk/swissprot/ |
| Inner Ear
Protein Database |
http://oto.wustl.edu/thc/innerear2d.htm |
| Protein
Folding Database |
http://pfd.med.monash.edu.au/ |
| CATH Protein
Structure Classification Database |
http://www.cathdb.info/ |
| The HIV-1,
human, protein interaction database |
http://www.ncbi.nlm.nih.gov/RefSeq/HIVInteractions/ |
| DExH/Protein
Database |
http://www.helicase.net/dexhd/dbhome.htm |
| Plant Protein
Membrane Database |
http://aramemnon.botanik.uni-koeln.de/ |
| BioMinT is an
easy to use information retrieval and extraction tool targetted at the
online biomedical literature. |
http://biomint.pharmadm.com/ |
| The MIPS
Mammalian Protein-Protein Interaction Database |
http://mips.gsf.de/proj/ppi/ |
| TransMembrane
Protein DataBase |
http://bioinfo.si.hirosaki-u.ac.jp/~TMPDB/ |
| Biological
databases (Database Library) |
http://www.biobase-international.com/ |
| Ligand Protein
Database |
http://lpdb.scripps.edu/ |
| Protien to
protein interaction database |
http://www.anc.ed.ac.uk/mscs/PPID/ |
| gpDB: a
database of G-proteins and their interaction with GPCRs |
http://biophysics.biol.uoa.gr/gpDB/ |
| Simple Modular Architecture Research Tool (SMART) protein database |
http://smart.embl-heidelberg.de/ |
| Ribosomal
Protein Gene Database (RPG) |
http://ribosome.med.miyazaki-u.ac.jp/ |
| Protein Ligand
Database (v1.3) |
http://www-mitchell.ch.cam.ac.uk/pld/ |
| SynDB: a
Synapse protein DataBase based on synapse ontology. |
http://syndb.cbi.pku.edu.cn/ |
| ProTherm (Thermodynamic Database for proteins and
mutants) |
http://gibk26.bse.kyutech.ac.jp/jouhou/Protherm/protherm.html |
| Plprot - a
plastid protein database-integrates data from large scale proteome
analyses of different plastid types. |
http://www.plprot.ethz.ch/ |
| SYSTERS
(Protein Family Database) |
http://systers.molgen.mpg.de/ |
| PDBTM (Protein
Data Bank of Transmembrane Proteins) |
http://pdbtm.enzim.hu/ |
| Phosphorylation Site Database |
http://vigen.biochem.vt.edu/xpd/xpd.htm |
| AAA Server
Home Page (Triple ‘A’ Super family) |
http://aaa-proteins.uni-graz.at/ |
| 3Dee -
Database of Protein Domain Definitions |
http://www.compbio.dundee.ac.uk/3Dee/ |
| Nucleolar
Proteome Database v 2.0 |
http://www.lamondlab.com/NOPdb/welcome.htm |
| PROKARYOTIC
PROTEIN PHOSPHATASE DATABASE |
http://vigen.biochem.vt.edu/p3d/p3d.htm |
| MPCD : Marseille Protein Crystallization Database |
http://www.crmcn.univ-mrs.fr/mpcd/ |
| Protein-protein interactions in various evolutionary lineages |
http://gemdock.life.nctu.edu.tw/3D-Interologs |
| Affinity data for protein-ligand complexes |
http://www.agklebe.de/affinity |
| ASPD-Artificial Selected Proteins/Peptides Database |
http://wwwmgs.bionet.nsc.ru/mgs/gnw/aspd/ |
| Cybase: Proteins with cyclic backbones |
http://research1t.imb.uq.edu.au/cybase/ |
| Protein conformations |
Decoys-R-Us: Computer-generated protein conformations based on sequence data |
http://dd.compbio.washington.edu/ |
| Protein domains |
CDD: Curated alignments of protein domains from Pfam, SMART and COG databases |
http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml |
| A database of protein domain families |
http://ekhidna.biocenter.helsinki.fi/sqgraph/pairsdb |
| Protein loop |
ArchDB-Automated classification of protein loop structures |
http://sbi.imim.es/archdb |
| Protein Subcellular Localization |
DBSubLoc: Database of protein Subcellular Localization |
http://www.bioinfo.tsinghua.edu.cn/dbsubloc.html |
| Proteome |
The Plasma
Proteome Database |
http://www.plasmaproteomedatabase.org/ |
| Open
Proteomics Database |
http://apropos.icmb.utexas.edu/OPD/ |
| ExPASy World
Wide Web (WWW) proteomics server of the Swiss ... WORLD-2DPAGE list -
Links to 2-D PAGE database servers |
http://expasy.org/ |
| Rice Proteome
Database |
http://gene64.dna.affrc.go.jp/RPD/main_en.html |
| Proteome
Database System for Microbial Research |
http://www.mpiib-berlin.mpg.de/2D-PAGE/ |
| Negative
Proteome Database |
http://superfly.ucsd.edu/negprot/ |
| The PRIDE (PRoteomics IDEntifications database) is a centralized standards
compliant, public data repository for proteomics data |
http://www.ebi.ac.uk/pride/ |
| NASC
Proteomics database for Arabidopsis data |
http://proteomics.arabidopsis.info/ |
| GenProtEC is
dedicated to the functions encoded by the Escherichia coli K-12 (strain
MG1655) genome |
http://genprotec.mbl.edu/ |
| Rice Proteome
Database |
http://gene64.dna.affrc.go.jp/RPD/database_en.html |
| UT Proteomics
Database (2D Database |
http://132.192.61.90/index.php |
| Organellar Map
Database |
http://proteome.biochem.mpg.de/ormd/ |
| The Global
Proteome Machine Database |
http://gpmdb.rockefeller.edu/ |
| Royan Proteome
Database |
http://www.royanproteomics.ir/ |
| Proteome
Database (Lipid Map Database) |
http://www.lipidmaps.org/data/proteome/index.cgi |
| 2D
electrophoresis proteome database |
http://www.pdata.ua.ac.be/musa/ |
| 3D-Genomics - Structural annotations for complete proteomes |
http://www.sbg.bio.ic.ac.uk/3dgenomics |
| CEBS: Database of toxicogenomics, microarray and proteomics data |
http://cebs.niehs.nih.gov/ |
| Psychrobacter arcticum |
Psychrobacter arcticum 273-4 Genome
Page |
http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?org=ntpa05 |
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