DBD

DATABASE OF BIOLOGICAL / BIOINFORMATICS DATABASE

 

 
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 Search according to your keyword (Suggest 10 databases: See your name in Encouragements List)

Keywords

Database Description

Website

Aedes sp.

Aedes aegypti Database http://www.broad.mit.edu/annotation/disease_vector/aedes_aegypti/

AceDB

A hierarchical database system for displaying genomic data (Caenorhabdis elegans)

http://www.acedb.org/

Alignment

Homologous Structure Alignment Database (HOMSTRAD)

http://www-cryst.bioc.cam.ac.uk/~homstrad/

Protein Alignments organised as Structural Superfamilies

http://caps.ncbs.res.in/campass/pass2.html

EMBL-ALIGN Information for Submitters

http://www.ebi.ac.uk/embl/Submission/alignment.html

Standards Alignment Database Homepage

http://standards.netacad-currdev.net/home/default.asp

BAliBASE (version 2.0): A benchmark alignment database,

http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE2/

The SCANPS VERSION 2.3.9 protein sequence scanning package - User Guide.

http://www.compbio.dundee.ac.uk/Software/Scanps/scanps.html

SAD---a normalized structural alignment database: improving sequence--structure alignments

http://portal.acm.org/citation.cfm?id=1092906.1093101

A Multiple Alignment Database

http://www.daimi.au.dk/~besen/TBiB2006/projects/project2.html

Alternative Splicing

Alternative Splicing Database

http://hazelton.lbl.gov/~teplitski/alt/

EDAS: EST Derived Alternative Splicing Database

http://www.ig-msk.ru:8005/EDAS/

ASTD: Alternative Splicing and Transcript Diversity http://www.ebi.ac.uk/astd/main.html;jsessionid=D55E5F0D3C1485A4C56AC1004EBDD67F
Human Genes with Alternative Splicing http://moult.umbi.umd.edu/human2004/
Alternative Splice Site Predictor (ASSP) http://www.es.embnet.org/~mwang/assp.html
Alternative Splicing website http://www.exonhit.com/index.php?page=59
Hollywood RNA Alternative Splicing Database http://hollywood.mit.edu/Login.php
Plant Alternative Splicing Database http://pasdb.genomics.org.cn/
H-DBAS: Human Database of  Alternative Splicing http://jbirc.jbic.or.jp/h-dbas/
Manually Annotated AlternativelySpliced Events (MAASE) database system http://maase.genomics.purdue.edu/
Putative Alternative Splicing Database (PALS db) http://ymbc.ym.edu.tw/palsdb/
ProSplicer : An Alternative Splicing Database based on Protein, mRNA, and EST Sequences http://prosplicer.mbc.nctu.edu.tw/
ECgene: Genome Annotation for Alternative Splicing http://genome.ewha.ac.kr/ECgene/
ASTRA (Alternative Splicing and TRanscription Archives) is the database of elementary patterns of alternative splicing and transcriptional initiation. http://alterna.cbrc.jp/
TassDB: TAndem Splice Site DataBase (TassDB stores extensive data about alternative splice events at GYNGYN donors and NAGNAG acceptors) http://helios.informatik.uni-freiburg.de/TassDB/
FastDB: Friendly Alternative Splicing and Transcripts Database http://www.fast-db.com/fastdb2/frame.html
Alternative Splicing Database http://www.bioinformatics.ucla.edu/ASAP2/
Alternative Splicing in Plants http://www.plantgdb.org/ASIP/
PALS db: Putative ALternative Splicing Database http://binfo.ym.edu.tw/passdb/index.html
ASHESdb - Alternatively Spliced Human genes by Exon Skipping - A Database http://sege.ntu.edu.sg/wester/ashes/links.htm
Splicerator (Integrated Human Alternative Splicing Database) http://dbsdb.nus.edu.sg/ihas/
European Alternative Splicing Database (Exonhit) http://www.exonhit.com/index.php?page=208&PHPSESSID=3e8528sm06npg0tm70sbehijr0

Agricultural

Agriculture and Food SEARCHABLE DATABASE

http://earthtrends.wri.org/searchable_db/index.php?theme=8

Agricultural Database

http://www.sdnbd.org/sdi/issues/agriculture/database/index.htm

The NAL Catalog (AGRICOLA) provides citations to agricultural literature.

http://agricola.nal.usda.gov/

Syrian Agriculture Database

http://www.napcsyr.org/sadb.htm

Amino Acid

DATABASES; PROTEIN/AMINO ACID

http://www.bioscience.org/urllists/protdb.htm

Annelling

Annealing Data Base

http://www.ailab.si/orange/doc/datasets/anneal.htm

Annotation

An open access database for gene regulatory element and polymorphism annotation

http://www.oreganno.org/oregano/Index.jsp

Columba - A Database of Protein Structure Annotation

http://www.columba-db.de/

Cyanobacteria Gene Annotation Database

http://cyano.genome.jp/

Fungal EST Annotation Database (FEADB)

https://fungalgenomics.concordia.ca/feadb/search.php

GadFly: Genome Annotation Database of Drosophila

http://www.fruitfly.org/annot/

GALA: Genome Alignment and Annotation Database

http://gala.cse.psu.edu/

HCNetDat is a DNA microarray gene annotation database

http://www.hartwellcenter.org/hcnetdat/

RAD (Rice Annotation Database) is a contig-oriented database for high-quality manual annotation of RGP, which can present non-redundant contig analyses by merging the accumulated PAC/BAC clones.

http://golgi.gs.dna.affrc.go.jp/SY-1102/rad/

RiceGAAS: Rice Genome Automated Annotation System

http://ricegaas.dna.affrc.go.jp/

The Vertebrate Genome Annotation (VEGA) database is a central repository for high quality, frequently updated, manual annotation of vertebrate finished genome sequence.

http://vega.sanger.ac.uk/index.html

The TIGR Arabidopsis thaliana Genome Annotation Database

http://www.tigr.org/tdb/e2k1/ath1/ath1.shtml

Zebrafish Chip Annotation Database contains putative annotations for the probes in the Zebrafish oligonucleotide array (Compugen).

http://giscompute.gis.a-star.edu.sg/~govind/zebrafish/version2/

 

Anopheles

The Anopheles Genome Programme http://www.anobase.org/
Anopheles information resource http://www.anopheles.org/
MR4 Anopheles Database http://www2.ncid.cdc.gov/a2k/

Antibody

Antibody Database

http://www.antibodyresource.com/onlinedata.html

Antigen

Peptide Antigen Database

http://www.proteinlounge.com/peptide_home.asp

Arabidopsis thaliana

ATIDB is the "Arabidopsis thaliana Integrated Database".

http://www.atidb.org/

Arabidopsis thaliana  Information Resource http://www.arabidopsis.org/
                                                                      

For New Database Entries and Suggestions

                                       E-mail : admin@biodbs.info

 

DBD: Database of Biological Database team are R.R. Siva Kiran, Department of Biotechnology, MS Ramaiah Institute of Technology, MSR Nagar, Bangalore, India and G. Hanumantha Rao, Center for Biotechnology, Department of Chemical Engineering, Andhra University, Visakhapatnam, India.

DBD consists of 1200 Database entries covering wide range of databases useful for biological researchers.

Encouragements List

 

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All Rights Reserved, Maintained by R.R. Siva Kiran, Department of Biotechnology, MS Ramaiah Institute of Technology, Bangalore, India

Last update: 26-July-2007

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