| Keywords |
Database Description |
Website |
| Abstract |
Deja Vu: A Database of Highly Similar and Duplicate Citations |
http://spore.swmed.edu/dejavu/ |
| AceDB |
A hierarchical database system for
displaying genomic data (Caenorhabdis elegans) |
http://www.acedb.org/ |
| Activity |
Functional DNA/RNA site activity |
http://wwwmgs.bionet.nsc.ru/mgs/systems/activity/ |
| Acyrthosiphon pisum |
AphidBase -
Genomic database for the pea aphid (Acyrthosiphon pisum)
|
http://www.aphidbase.com/ |
| Aedes sp. |
Aedes aegypti Database |
http://www.broad.mit.edu/annotation/disease_vector/aedes_aegypti/ |
| Alignment |
Homologous Structure Alignment
Database (HOMSTRAD) |
http://www-cryst.bioc.cam.ac.uk/~homstrad/ |
| Protein Alignments organised as
Structural Superfamilies |
http://caps.ncbs.res.in/campass/pass2.html |
|
EMBL-ALIGN Information for Submitters |
http://www.ebi.ac.uk/embl/Submission/alignment.html |
|
Standards Alignment Database Homepage |
http://standards.netacad-currdev.net/home/default.asp |
|
BAliBASE (version 2.0): A benchmark
alignment database, |
http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE2/ |
|
The SCANPS VERSION 2.3.9 protein
sequence scanning package - User Guide. |
http://www.compbio.dundee.ac.uk/Software/Scanps/scanps.html |
|
SAD-A normalized structural
alignment database: improving sequence--structure alignments |
http://portal.acm.org/citation.cfm?id=1092906.1093101 |
|
A Multiple Alignment Database |
http://www.daimi.au.dk/~besen/TBiB2006/projects/project2.html |
| CDD: Curated alignments of protein domains from Pfam, SMART and COG databases |
http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml |
| CE: Combinatorial Extension method to compute and review 3D protein structure alignments |
http://cl.sdsc.edu/ce.html |
| Allele |
Allele frequencies and DNA polymorphisms |
http://alfred.med.yale.edu/ |
| Alternative
Splicing |
ASDB-Alternative Splicing Database |
http://hazelton.lbl.gov/~teplitski/alt/ |
|
EDAS: EST Derived Alternative
Splicing Database |
http://www.ig-msk.ru:8005/EDAS/ |
|
ASTD: Alternative Splicing and
Transcript Diversity |
http://www.ebi.ac.uk/astd/main.html;jsessionid=D55E5F0D3C1485A4C56AC1004EBDD67F |
|
Human Genes
with Alternative Splicing |
http://moult.umbi.umd.edu/human2004/ |
|
Alternative
Splice Site Predictor (ASSP) |
http://www.es.embnet.org/~mwang/assp.html |
|
Alternative
Splicing website |
http://www.exonhit.com/index.php?page=59 |
|
Hollywood RNA Alternative Splicing
Database |
http://hollywood.mit.edu/Login.php |
|
Plant
Alternative Splicing Database |
http://pasdb.genomics.org.cn/ |
|
H-DBAS: Human
Database of Alternative Splicing |
http://jbirc.jbic.or.jp/h-dbas/ |
|
Manually Annotated
AlternativelySpliced Events (MAASE) database system |
http://maase.genomics.purdue.edu/ |
|
Putative Alternative Splicing
Database (PALS db) |
http://ymbc.ym.edu.tw/palsdb/ |
|
ProSplicer : An Alternative
Splicing Database based on Protein, mRNA, and EST Sequences |
http://prosplicer.mbc.nctu.edu.tw/ |
|
ECgene: Genome Annotation for
Alternative Splicing |
http://genome.ewha.ac.kr/ECgene/ |
|
ASTRA (Alternative Splicing and
TRanscription Archives) is the database of elementary patterns of
alternative splicing and transcriptional initiation. |
http://alterna.cbrc.jp/ |
|
TassDB: TAndem Splice Site DataBase
(TassDB stores extensive data about alternative splice events at GYNGYN
donors and NAGNAG acceptors) |
http://helios.informatik.uni-freiburg.de/TassDB/ |
|
FastDB: Friendly Alternative
Splicing and Transcripts Database |
http://www.fast-db.com/fastdb2/frame.html |
|
Alternative Splicing Database |
http://www.bioinformatics.ucla.edu/ASAP2/ |
|
Alternative Splicing in Plants |
http://www.plantgdb.org/ASIP/ |
|
PALS db: Putative ALternative
Splicing Database |
http://binfo.ym.edu.tw/passdb/index.html |
|
ASHESdb - Alternatively Spliced
Human genes by Exon Skipping - A Database |
http://sege.ntu.edu.sg/wester/ashes/links.htm |
|
Splicerator (Integrated Human
Alternative Splicing Database) |
http://dbsdb.nus.edu.sg/ihas/ |
|
European Alternative Splicing
Database (Exonhit) |
http://www.exonhit.com/index.php?page=208&PHPSESSID=3e8528sm06npg0tm70sbehijr0 |
| Alzheimer's |
AlzGene-A database of all published Alzheimer's disease genetic association studies |
http://www.alzgene.org/ |
| Agammaglobulinemia |
BTKbase: Mutation registry for X-linked agammaglobulinemia |
http://bioinf.uta.fi/BTKbase/ |
| Agricultural |
Agriculture and Food SEARCHABLE
DATABASE |
http://earthtrends.wri.org/searchable_db/index.php?theme=8 |
|
Agricultural Database |
http://www.sdnbd.org/sdi/issues/agriculture/database/index.htm |
|
The NAL Catalog (AGRICOLA) provides
citations to agricultural literature. |
http://agricola.nal.usda.gov/ |
|
Syrian Agriculture Database |
http://www.napcsyr.org/sadb.htm |
| GO annotations for agriculturally important plants and animals |
http://www.agbase.msstate.edu/ |
| Amino Acid
|
DATABASES; PROTEIN/AMINO ACID |
http://www.bioscience.org/urllists/protdb.htm |
| Amino acid indices |
http://www.genome.ad.jp/aaindex/ |
| Amino acid-nucleotide interaction database |
http://aant.icmb.utexas.edu/ |
ACS (Active Sequence Collection) -Biologically-active short amino acid sequences
|
http://bioinformatica.isa.cnr.it/ASC/ |
| Aminoacyl-tRNA |
Aminoacyl-tRNA synthetase sequences |
http://rose.man.poznan.pl/aars/index.html |
| Androgen |
Androgen Receptor Gene Mutations Database |
http://www.mcgill.ca/androgendb/ |
| Angiogenesis |
AngioDB-Database of angiogenesis and angiogenesis-related molecules |
http://angiodb.snu.ac.kr/ |
| Animal |
Animal Genome Size Database |
http://www.genomesize.com/ |
Animal Toxin Database
|
http://protchem.hunnu.edu.cn/toxin |
| AnimalQTLdb-Quantitative trait loci in livestock animals |
http://www.animalgenome.org/QTLdb/ |
| Annelling
|
Annealing Data Base |
http://www.ailab.si/orange/doc/datasets/anneal.htm |
| Annotation |
An open access database for gene
regulatory element and polymorphism annotation |
http://www.oreganno.org/oregano/Index.jsp |
|
Columba - A Database of Protein
Structure Annotation |
http://www.columba-db.de/ |
|
Cyanobacteria Gene Annotation
Database |
http://cyano.genome.jp/ |
|
Fungal EST Annotation Database (FEADB) |
https://fungalgenomics.concordia.ca/feadb/search.php |
|
GadFly: Genome Annotation Database of
Drosophila |
http://www.fruitfly.org/annot/ |
|
GALA: Genome Alignment and Annotation
Database |
http://gala.cse.psu.edu/ |
|
HCNetDat is a DNA microarray gene
annotation database |
http://www.hartwellcenter.org/hcnetdat/ |
|
RAD (Rice Annotation Database) is a
contig-oriented database for high-quality manual annotation of RGP,
which can present non-redundant contig analyses by merging the
accumulated PAC/BAC clones. |
http://golgi.gs.dna.affrc.go.jp/SY-1102/rad/ |
|
RiceGAAS: Rice Genome Automated
Annotation System |
http://ricegaas.dna.affrc.go.jp/ |
|
The Vertebrate Genome Annotation
(VEGA) database is a central repository for high quality, frequently
updated, manual annotation of vertebrate finished genome sequence. |
http://vega.sanger.ac.uk/index.html |
|
The TIGR Arabidopsis thaliana Genome
Annotation Database |
http://www.tigr.org/tdb/e2k1/ath1/ath1.shtml |
|
Zebrafish Chip Annotation Database
contains putative annotations for the probes in the Zebrafish
oligonucleotide array (Compugen). |
http://giscompute.gis.a-star.edu.sg/~govind/zebrafish/version2/ |
| GO annotations for agriculturally important plants and animals |
http://www.agbase.msstate.edu/ |
| 3D-Genomics - Structural annotations for complete proteomes |
http://www.sbg.bio.ic.ac.uk/3dgenomics |
| ASAP - A Systematic Annotation Package Community analysis of E. coli and related genomes |
https://asap.ahabs.wisc.edu/annotation/php/ASAP1.htm |
| CUTDB: Community annotation resource for proteases, their substrates and cleavage sites |
http://cutdb.burnham.org/ |
| Anopheles |
The Anopheles Genome Programme |
http://www.anobase.org/ |
|
Anopheles information resource |
http://www.anopheles.org/ |
|
MR4 Anopheles Database |
http://www2.ncid.cdc.gov/a2k/ |
| Antibody
|
Antibody Database |
http://www.antibodyresource.com/onlinedata.html |
| Antibody online Database |
http://www.antibodies-online.com |
| Antimicrobial |
ANTIMIC -
Database of natural antimicrobial peptides |
http://research.i2r.a-star.edu.sg/Templar/DB/ANTIMIC/ |
| APD-Antimicrobial peptide database |
http://aps.unmc.edu/AP/main.php |
| Antigen
|
Peptide Antigen Database |
http://www.proteinlounge.com/peptide_home.asp |
| Antisense |
AOBase-Antisense oligonucleotide selection and design |
http://www.bioit.org.cn/ao/aobase |
| Aptamer |
Aptamer Database - A database on aptamers, small RNA (or DNA) molecules capable of binding nucleic acids, proteins, etc. |
http://aptamer.icmb.utexas.edu/ |
| Apicomplexan |
ApiDB-Unified resource for various apicomplexan species |
http://apidb.org/ |
| ApiDots-EST sequences from various apicomplexan parasites |
http://www.cbil.upenn.edu/apidots/ |
| Arabidopsis
thaliana |
ATIDB is the
"Arabidopsis thaliana Integrated Database" |
http://www.atidb.org/ |
| Arabidopsis thaliana Information Resource
|
http://www.arabidopsis.org/ |
| AGRIS - Arabidopsis Gene Regulatory Information Server |
http://arabidopsis.med.ohio-state.edu/ |
| Arabidopsis Mitochondrial Protein Database - Experimentally identified mitochondrial proteins in Arabidopsis |
http://www.plantenergy.uwa.edu.au/applications/ampdb/index.html |
Arabidopsis MPSS-
Arabidopsis gene expression detected by massively parallel signature sequencing
|
http://mpss.udel.edu/at/ |
| Arabidopsis Nucleolar Protein Database -
Comparative analysis of nucleolar proteomes of human and Arabidopsis |
http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/proteome_comparison |
| ARAMEMNON-Arabidopsis thaliana membrane proteins and transporters |
http://aramemnon.botanik.uni-koeln.de/ |
| ARTADEdb-Transcriptional structures elucidated based on tiling arrays in Arabidopsis |
http://omicspace.riken.jp/ARTADE/ |
| ASRP-Arabidopsis thaliana small RNA project |
http://asrp.cgrb.oregonstate.edu/ |
| AtGDB-Arabidopsis thaliana genome database |
http://www.plantgdb.org/AtGDB |
| AthaMap- Genome-wide map of putative transcription factor binding sites in Arabidopsis thaliana |
http://www.athamap.de/ |
| AtPID -
Arabidopsis thaliana Protein Interactome Database |
http://atpid.biosino.org/ |
| ATTED-II - Coexpressed gene sets and gene regulators in Arabidopsis |
http://www.atted.bio.titech.ac.jp/ |
| CATdb: Arabidopsis transcriptome data |
http://urgv.evry.inra.fr/CATdb |
| CATMA (Complete Arabidopsis Transcriptome MicroArray): Arabidopsis gene sequence tags |
http://www.catma.org/ |
| DATF: Database of Arabidopsis transcription factors |
http://datf.cbi.pku.edu.cn/ |
| Arabs |
CTGA: A database for genetic disorders in Arabs |
http://www.cags.org.ae/ |
| Archaeal |
Archaeal and bacterial ABC transporters
|
http://www-abcdb.biotoul.fr/ |
| Arthropod cuticle |
CuticleDB: Structural proteins of Arthropod cuticle |
http://bioinformatics.biol.uoa.gr/cuticleDB |
| Ascidian |
Ascidian Body Atlas |
http://ciona.lab.nig.ac.jp/ascidian/top.html |
| Ashbya gossypii |
Ashbya gossypii genome database |
http://agd.unibas.ch/ |
| Aspergillus sp. |
CADRE - Central Aspergillus Data Repository: Central Aspergillus data repository |
http://www.cadre.man.ac.uk/ |
