Biology Database

Abstract Deja Vu: A Database of Highly Similar and Duplicate Citations http://spore.swmed.edu/dejavu/
AceDB A hierarchical database system for displaying genomic data (Caenorhabdis elegans) http://www.acedb.org/
Activity Functional DNA/RNA site activity http://wwwmgs.bionet.nsc.ru/mgs/systems/activity/
Acyrthosiphon pisum AphidBase - Genomic database for the pea aphid (Acyrthosiphon pisum)
http://www.aphidbase.com/
Aedes sp. Aedes aegypti Database http://www.broad.mit.edu/annotation/disease_vector/aedes_aegypti/
Alignment Homologous Structure Alignment Database (HOMSTRAD) http://www-cryst.bioc.cam.ac.uk/~homstrad/
Protein Alignments organised as Structural Superfamilies http://caps.ncbs.res.in/campass/pass2.html
EMBL-ALIGN Information for Submitters http://www.ebi.ac.uk/embl/Submission/alignment.html
Standards Alignment Database Homepage http://standards.netacad-currdev.net/home/default.asp
BAliBASE (version 2.0): A benchmark alignment database, http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE2/
The SCANPS VERSION 2.3.9 protein sequence scanning package - User Guide. http://www.compbio.dundee.ac.uk/Software/Scanps/scanps.html
SAD-A normalized structural alignment database: improving sequence--structure alignments http://portal.acm.org/citation.cfm?id=1092906.1093101
A Multiple Alignment Database http://www.daimi.au.dk/~besen/TBiB2006/projects/project2.html
CDD: Curated alignments of protein domains from Pfam, SMART and COG databases http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
CE: Combinatorial Extension method to compute and review 3D protein structure alignments http://cl.sdsc.edu/ce.html
Allele Allele frequencies and DNA polymorphisms http://alfred.med.yale.edu/
Alternative Splicing ASDB-Alternative Splicing Database http://hazelton.lbl.gov/~teplitski/alt/
EDAS: EST Derived Alternative Splicing Database http://www.ig-msk.ru:8005/EDAS/
ASTD: Alternative Splicing and Transcript Diversity http://www.ebi.ac.uk/astd/main.html;jsessionid=D55E5F0D3C1485A4C56AC1004EBDD67F
Human Genes with Alternative Splicing http://moult.umbi.umd.edu/human2004/
Alternative Splice Site Predictor (ASSP) http://www.es.embnet.org/~mwang/assp.html
Alternative Splicing website http://www.exonhit.com/index.php?page=59
Hollywood RNA Alternative Splicing Database http://hollywood.mit.edu/Login.php
Plant Alternative Splicing Database http://pasdb.genomics.org.cn/
H-DBAS: Human Database of Alternative Splicing http://jbirc.jbic.or.jp/h-dbas/
Manually Annotated AlternativelySpliced Events (MAASE) database system http://maase.genomics.purdue.edu/
Putative Alternative Splicing Database (PALS db) http://ymbc.ym.edu.tw/palsdb/
ProSplicer : An Alternative Splicing Database based on Protein, mRNA, and EST Sequences http://prosplicer.mbc.nctu.edu.tw/
ECgene: Genome Annotation for Alternative Splicing http://genome.ewha.ac.kr/ECgene/
ASTRA (Alternative Splicing and TRanscription Archives) is the database of elementary patterns of alternative splicing and transcriptional initiation. http://alterna.cbrc.jp/
TassDB: TAndem Splice Site DataBase (TassDB stores extensive data about alternative splice events at GYNGYN donors and NAGNAG acceptors) http://helios.informatik.uni-freiburg.de/TassDB/
FastDB: Friendly Alternative Splicing and Transcripts Database http://www.fast-db.com/fastdb2/frame.html
Alternative Splicing Database http://www.bioinformatics.ucla.edu/ASAP2/
Alternative Splicing in Plants http://www.plantgdb.org/ASIP/
PALS db: Putative ALternative Splicing Database http://binfo.ym.edu.tw/passdb/index.html
ASHESdb - Alternatively Spliced Human genes by Exon Skipping - A Database http://sege.ntu.edu.sg/wester/ashes/links.htm
Splicerator (Integrated Human Alternative Splicing Database) http://dbsdb.nus.edu.sg/ihas/
European Alternative Splicing Database (Exonhit) http://www.exonhit.com/index.php?page=208&PHPSESSID=3e8528sm06npg0tm70sbehijr0
Alzheimer's AlzGene-A database of all published Alzheimer's disease genetic association studies http://www.alzgene.org/
Agammaglobulinemia BTKbase: Mutation registry for X-linked agammaglobulinemia http://bioinf.uta.fi/BTKbase/
Agricultural Agriculture and Food SEARCHABLE DATABASE http://earthtrends.wri.org/searchable_db/index.php?theme=8
Agricultural Database http://www.sdnbd.org/sdi/issues/agriculture/database/index.htm
The NAL Catalog (AGRICOLA) provides citations to agricultural literature. http://agricola.nal.usda.gov/
Syrian Agriculture Database http://www.napcsyr.org/sadb.htm
GO annotations for agriculturally important plants and animals http://www.agbase.msstate.edu/
Amino Acid DATABASES; PROTEIN/AMINO ACID http://www.bioscience.org/urllists/protdb.htm
Amino acid indices http://www.genome.ad.jp/aaindex/
Amino acid-nucleotide interaction database http://aant.icmb.utexas.edu/
ACS (Active Sequence Collection) -Biologically-active short amino acid sequences
http://bioinformatica.isa.cnr.it/ASC/
Aminoacyl-tRNA Aminoacyl-tRNA synthetase sequences http://rose.man.poznan.pl/aars/index.html
Androgen Androgen Receptor Gene Mutations Database http://www.mcgill.ca/androgendb/
Angiogenesis AngioDB-Database of angiogenesis and angiogenesis-related molecules http://angiodb.snu.ac.kr/
Animal Animal Genome Size Database http://www.genomesize.com/
Animal Toxin Database
http://protchem.hunnu.edu.cn/toxin
AnimalQTLdb-Quantitative trait loci in livestock animals http://www.animalgenome.org/QTLdb/
Annelling Annealing Data Base http://www.ailab.si/orange/doc/datasets/anneal.htm
Annotation An open access database for gene regulatory element and polymorphism annotation http://www.oreganno.org/oregano/Index.jsp
Columba - A Database of Protein Structure Annotation http://www.columba-db.de/
Cyanobacteria Gene Annotation Database http://cyano.genome.jp/
Fungal EST Annotation Database (FEADB) https://fungalgenomics.concordia.ca/feadb/search.php
GadFly: Genome Annotation Database of Drosophila http://www.fruitfly.org/annot/
GALA: Genome Alignment and Annotation Database http://gala.cse.psu.edu/
HCNetDat is a DNA microarray gene annotation database http://www.hartwellcenter.org/hcnetdat/
RAD (Rice Annotation Database) is a contig-oriented database for high-quality manual annotation of RGP, which can present non-redundant contig analyses by merging the accumulated PAC/BAC clones. http://golgi.gs.dna.affrc.go.jp/SY-1102/rad/
RiceGAAS: Rice Genome Automated Annotation System http://ricegaas.dna.affrc.go.jp/
The Vertebrate Genome Annotation (VEGA) database is a central repository for high quality, frequently updated, manual annotation of vertebrate finished genome sequence. http://vega.sanger.ac.uk/index.html
The TIGR Arabidopsis thaliana Genome Annotation Database http://www.tigr.org/tdb/e2k1/ath1/ath1.shtml
Zebrafish Chip Annotation Database contains putative annotations for the probes in the Zebrafish oligonucleotide array (Compugen). http://giscompute.gis.a-star.edu.sg/~govind/zebrafish/version2/ 
GO annotations for agriculturally important plants and animals http://www.agbase.msstate.edu/
3D-Genomics - Structural annotations for complete proteomes http://www.sbg.bio.ic.ac.uk/3dgenomics
ASAP - A Systematic Annotation Package Community analysis of E. coli and related genomes https://asap.ahabs.wisc.edu/annotation/php/ASAP1.htm
CUTDB: Community annotation resource for proteases, their substrates and cleavage sites http://cutdb.burnham.org/
Anopheles The Anopheles Genome Programme http://www.anobase.org/
Anopheles information resource http://www.anopheles.org/
MR4 Anopheles Database http://www2.ncid.cdc.gov/a2k/
Antibody Antibody Database http://www.antibodyresource.com/onlinedata.html
Antibody online Database http://www.antibodies-online.com
Antimicrobial ANTIMIC - Database of natural antimicrobial peptides http://research.i2r.a-star.edu.sg/Templar/DB/ANTIMIC/
APD-Antimicrobial peptide database http://aps.unmc.edu/AP/main.php
Antigen Peptide Antigen Database http://www.proteinlounge.com/peptide_home.asp
Antisense AOBase-Antisense oligonucleotide selection and design http://www.bioit.org.cn/ao/aobase
Aptamer Aptamer Database - A database on aptamers, small RNA (or DNA) molecules capable of binding nucleic acids, proteins, etc. http://aptamer.icmb.utexas.edu/
Apicomplexan ApiDB-Unified resource for various apicomplexan species http://apidb.org/
ApiDots-EST sequences from various apicomplexan parasites http://www.cbil.upenn.edu/apidots/
Arabidopsis thaliana ATIDB is the "Arabidopsis thaliana Integrated Database" http://www.atidb.org/
Arabidopsis thaliana Information Resource http://www.arabidopsis.org/
AGRIS - Arabidopsis Gene Regulatory Information Server http://arabidopsis.med.ohio-state.edu/
Arabidopsis Mitochondrial Protein Database - Experimentally identified mitochondrial proteins in Arabidopsis http://www.plantenergy.uwa.edu.au/applications/ampdb/index.html
Arabidopsis MPSS- Arabidopsis gene expression detected by massively parallel signature sequencing
http://mpss.udel.edu/at/
Arabidopsis Nucleolar Protein Database - Comparative analysis of nucleolar proteomes of human and Arabidopsis http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/proteome_comparison
ARAMEMNON-Arabidopsis thaliana membrane proteins and transporters http://aramemnon.botanik.uni-koeln.de/
ARTADEdb-Transcriptional structures elucidated based on tiling arrays in Arabidopsis http://omicspace.riken.jp/ARTADE/
ASRP-Arabidopsis thaliana small RNA project http://asrp.cgrb.oregonstate.edu/
AtGDB-Arabidopsis thaliana genome database http://www.plantgdb.org/AtGDB
AthaMap- Genome-wide map of putative transcription factor binding sites in Arabidopsis thaliana http://www.athamap.de/
AtPID - Arabidopsis thaliana Protein Interactome Database http://atpid.biosino.org/
ATTED-II - Coexpressed gene sets and gene regulators in Arabidopsis http://www.atted.bio.titech.ac.jp/
CATdb: Arabidopsis transcriptome data http://urgv.evry.inra.fr/CATdb
CATMA (Complete Arabidopsis Transcriptome MicroArray): Arabidopsis gene sequence tags http://www.catma.org/
DATF: Database of Arabidopsis transcription factors http://datf.cbi.pku.edu.cn/
Arabs CTGA: A database for genetic disorders in Arabs http://www.cags.org.ae/
Archaeal Archaeal and bacterial ABC transporters
http://www-abcdb.biotoul.fr/
Arthropod cuticle CuticleDB: Structural proteins of Arthropod cuticle http://bioinformatics.biol.uoa.gr/cuticleDB
Ascidian Ascidian Body Atlas http://ciona.lab.nig.ac.jp/ascidian/top.html
Ashbya gossypii Ashbya gossypii genome database http://agd.unibas.ch/
Aspergillus sp. CADRE - Central Aspergillus Data Repository: Central Aspergillus data repository http://www.cadre.man.ac.uk/
 

 

Database Submission Form:

Submit Databases to DBD in the following format. After verification it will be posted in DBD in 2 or 3 weeks. For further queries contact rrskiran@msrit.edu.

Enter Database Website : 

Database Description:

Suitable Keyword: 

Institution Name 

Official Email Address 


 
DBD: Database of Biological Database team are R.R. Siva Kiran, MVN Setty, Department of Biotechnology, MS Ramaiah Institute of Technology, MSR Nagar, Bangalore, India and G. Hanumantha Rao, Center for Biotechnology, Department of Chemical Engineering, Andhra University, Visakhapatnam-530003, India. DBD consists of 1200 Database entries covering wide range of databases useful for biological researchers.

Encouragements List (or list of database contributors)

Andhra University
All Rights Reserved, Maintained by R.R. Siva Kiran, Department of Biotechnology, MS Ramaiah Institute of Technology, Bangalore, India 

Contact us